User:Karmella Haynes/Notebook/BioBrick cloning/2013/01/05: Difference between revisions

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# V0120, Gib_BBS F / Gib_BBP R
# V0120, Gib_BBS F / Gib_BBP R
# pSB1A3, Gib_BBS F / Gib_BBP R
# pSB1A3, Gib_BBS F / Gib_BBP R
# hPCD, BBP-hPCD fwd / hPCD-BL01 rev
# hPCD, BBP-hPCD fwd (BL9) / hPCD-BL01 rev (BL7)
# BL01, hPCD-BL01 fwd / BL01-BBS rev
# BL01, hPCD-BL01 fwd (BL8) / BL01-BBS rev (BL10)


{| {{table}} border="1" cellspacing="3" <!-- Digest check rxn. table -->
{| {{table}} border="1" cellspacing="3" <!-- Digest check rxn. table -->

Revision as of 12:20, 5 January 2013

Karmella's BioBrick Cloning <html><img src="/images/9/94/Report.png" border="0" /></html> Main project page
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01/05/13

  • Golden gate: PCR parts, complete protocol for Brady's construct
  • Gibson: PCR parts, complete protocol for Brady's construct


Gibson Assembly

  1. hPCD + BL01 + V0120
  2. hPCD + BL01 + pSB1A3


PCR

  1. V0120, Gib_BBS F / Gib_BBP R
  2. pSB1A3, Gib_BBS F / Gib_BBP R
  3. hPCD, BBP-hPCD fwd (BL9) / hPCD-BL01 rev (BL7)
  4. BL01, hPCD-BL01 fwd (BL8) / BL01-BBS rev (BL10)
Reagent Volume Expected:
1. V0120 = 3200
2. pSB1A3 = 2000
3. hPCD = 186
4. BL01 = 2520 		Hover name
10 μL/lane; 1% agarose; Ladder
DNA(plasmid) 0.5 μL
10 μM primer 1 1.0
10 μM primer 2 1.0
2x GoTaq mix 25.0
dH2O ##
  50 μL
  • 95°C, 3 min.
  • [95°C, 30 sec.; 57°C, 30 sec.; 72°C, 2 min.] x 30
  • 72°C, 3 min.
  • 4°C, ∞


Golden Gate Assembly

  • Try new protocol from Dave Savage
  1. hPCD + BL01 + V0120
  2. hPCD + BL01 + pSB1A3
  • Check the sequences for BsmBI sites!

PCR

  1. V0120, gg_BBS F / gg_BBP R
  2. pSB1A3, gg_BBS F / gg_BBP R
  3. hPCD, gg_BBP-hPCD F / gg_hPCD-BL01 R
  4. BL01, gg_BL01 F / gg_BL01-BBS R
Reagent Volume Expected:
1. V0120 = size
2. pSB1A3 = size
3. hPCD = size
4. BL01 = size 		Hover name
10 μL/lane; 1% agarose; Ladder
DNA(plasmid) 0.5 μL
10 μM primer 1 1.0
10 μM primer 2 1.0
2x GoTaq mix 25.0
dH2O ##
  50 μL
  • 95°C, 3 min.
  • [95°C, 30 sec.; 57°C, 30 sec.; 72°C, 2 min.] x 30
  • 72°C, 3 min.
  • 4°C, ∞




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