User:Karmella Haynes/Notebook/BioBrick cloning/2012/12/11

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{| {{table}} cellspacing="3" <!-- Ligation rxn table -->
{| {{table}} cellspacing="3" <!-- Ligation rxn table -->
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| &nbsp;            || 1    || 2   ||
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| &nbsp;            || 1    || 2  
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| Insert DNA        || 1.0  || ---  ||
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| Insert DNA        || 1.0  || ---   
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| Vector DNA        || 0.5  || 0.5  ||
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| Vector DNA        || 0.5  || 0.5   
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| 2x lgn buf (Roche) || 5.0  || 5.0 ||
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| 2x lgn buf (Roche) || 5.0  || 5.0  
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|-
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| T4 ligase (NEB)    || 1.0  || 1.0  ||
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| T4 ligase (NEB)    || 1.0  || 1.0   
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| dH<sub>2</sub>O    || 2.5  || 3.5  ||
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| dH<sub>2</sub>O    || 2.5  || 3.5   
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| &nbsp;            || 10 μL || 10 μL ||
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| &nbsp;            || 10 μL || 10 μL  
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Revision as of 19:33, 11 December 2012

Karmella's BioBrick Cloning Main project page
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12/11/12

  • Assembly: KAH111 + C-His (trouble shooting for Behzad, start from plasmids)
  • Minipreps: Rene's pSB1A3-RFP (2); cut with X/S for Brady and Vi's Gibson cloning


Assemblies

  1. KAH111/C-His: 5' part/(E/P)/size + C-His/(E/P)/3600


  • Digests (Fermentas FD)
    • Specific notes
Reagent Volume Hover name
30 μL/lane, 1% agarose; Ladder
DNA (plasmid) 15.0 μL
10x buffer 3.0
enzyme 1 1.0
enzyme 2 1.0
dH2O 10.0
  30 μL --> 37°C/ ~30 min.


  • Measure conc.'s of DNA purified from gel (Zymo kit)
Sample OD260 260/280 ng/μL
1. KAH11 (E/P) --- --- ---
2. C-His (E/P) --- --- ---


  • Ligations
Ligation Plate results (lig : neg crtl) 12/12/12
1. KAH111(E/P)/size, 16 ng + C-His(E/P)/3600, 25ng new BioBrick #:1 (Pick #)
2. C-His(E/P)/ 25 ng  
  1 2
Insert DNA 1.0 ---
Vector DNA 0.5 0.5
2x lgn buf (Roche) 5.0 5.0
T4 ligase (NEB) 1.0 1.0
dH2O 2.5 3.5
  10 μL 10 μL


Minipreps

  • pSB1A3-RFP (retransformation from 12/10/12)
  • Concentrations: (1) 260 = , 260/280 = , ng/μL = ; (2) 260 = , 260/280 = , ng/μL = ;
  • Digest 10 μL of each with X/S for Gibson cloning (Brady and Vi)
Reagent Volume Expected:
3. pSB1A3 = size
4. BB2 = size
 Hover name
15 μL/lane; 1% agarose; Ladder
DNA(plasmid) 10.0 μL
10X buffer 3.0
XbaI 1.0
SpeI 1.0
dH2O 15.0
  15 μL --> 37°C/ ~30 min.


  • Gel purification: combined the two slices
    • Concentration: 260 = , 260/280 = , ng/μL =



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