User:Jose Fabricio Lopez/Notebook/GEDF/2012/10/02
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==Trichoderma & P. vulgaris interaction== | ==Trichoderma & P. vulgaris interaction== | ||
====Things to do==== | ====Things to do==== | ||
| - | + | *Capture VOCs | |
====Things done==== | ====Things done==== | ||
| - | + | *Abort capture. | |
===Loogbook=== | ===Loogbook=== | ||
| - | + | *Many beans are contaminated with fungi. :( sadly we need to wait for a new opportunity and new set to measuer VOCs. | |
==Intergenic sequences in T.atroviride== | ==Intergenic sequences in T.atroviride== | ||
====Things to do==== | ====Things to do==== | ||
| - | + | *Analyze 20 matches. | |
| + | *Correct mistakes in coordinates in 0bp file. run Blast to overview check. | ||
| + | *Run analysis again with FilteringBLASTsFromAugustusPredictions.R in /Scripts & Data. | ||
====Things done==== | ====Things done==== | ||
| - | + | *Analyzed. | |
| + | *Corrected. | ||
| + | *Re-analyzing. | ||
===Loogbook=== | ===Loogbook=== | ||
| - | + | *Just 20 hits. Seems there is something wrong. I see the coordinates in 0bp file and they are wrong!!! in file GettingSequences.R (I cant find the Script were I extract 0,480,1020,770), but this one works. And I create the file IntergenicFastaCorrected.fas (extracts just 0bp seqs). | |
| + | *Re-analysing. | ||
==Extras== | ==Extras== | ||
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Revision as of 18:13, 2 October 2012
 Gene Expression and Development in Fungi
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Trichoderma & P. vulgaris interactionThings to do
Things done
Loogbook
Intergenic sequences in T.atrovirideThings to do
Things done
Loogbook
Extras |
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