User:Jose Fabricio Lopez/Notebook/GEDF/2012/10/02: Difference between revisions

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==Trichoderma & P. vulgaris interaction==
==Trichoderma & P. vulgaris interaction==
====Things to do====
====Things to do====
 
*Capture VOCs
====Things done====
====Things done====
 
*Abort capture.
===Loogbook===
===Loogbook===
 
*Many beans are contaminated with fungi. :( sadly we need to wait for a new opportunity and new set to measuer VOCs.
==Intergenic sequences in T.atroviride==
==Intergenic sequences in T.atroviride==
====Things to do====
====Things to do====
 
*Analyze 20 matches.
*Correct mistakes in coordinates in 0bp file. run Blast to overview check.
*Run analysis again with FilteringBLASTsFromAugustusPredictions.R in /Scripts & Data.
====Things done====
====Things done====
 
*Analyzed.
*Corrected.
*Re-analyzing.
===Loogbook===
===Loogbook===
 
*Just 20 hits. Seems there is something wrong. I see the coordinates in 0bp file and they are wrong!!! in file GettingSequences.R (I cant find the Script were I extract 0,480,1020,770), but this one works. And I create the file IntergenicFastaCorrected.fas (extracts just 0bp seqs).
*Re-analysing.
==Extras==
==Extras==


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Revision as of 15:13, 2 October 2012

Gene Expression and Development in Fungi <html><img src="http://openwetware.org/images/9/94/Report.png" border="0" /></html> Main project page
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Trichoderma & P. vulgaris interaction

Things to do

  • Capture VOCs

Things done

  • Abort capture.

Loogbook

  • Many beans are contaminated with fungi. :( sadly we need to wait for a new opportunity and new set to measuer VOCs.

Intergenic sequences in T.atroviride

Things to do

  • Analyze 20 matches.
  • Correct mistakes in coordinates in 0bp file. run Blast to overview check.
  • Run analysis again with FilteringBLASTsFromAugustusPredictions.R in /Scripts & Data.

Things done

  • Analyzed.
  • Corrected.
  • Re-analyzing.

Loogbook

  • Just 20 hits. Seems there is something wrong. I see the coordinates in 0bp file and they are wrong!!! in file GettingSequences.R (I cant find the Script were I extract 0,480,1020,770), but this one works. And I create the file IntergenicFastaCorrected.fas (extracts just 0bp seqs).
  • Re-analysing.

Extras
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