User:Jose Fabricio Lopez/Notebook/GEDF/2012/09/12: Difference between revisions
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*Training Agusutus with JGI ESTs. | *Training Agusutus with JGI ESTs. | ||
*Run prediction Augustus with 0bp away gene set. | *Run prediction Augustus with 0bp away gene set. | ||
*Run prediction Augustus with both set. | |||
====Things done==== | ====Things done==== | ||
*Checked BLAST btwn t.at.both vs ncrna. | *Checked BLAST btwn t.at.both vs ncrna. | ||
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*Job submitted and running with JGI EST. | *Job submitted and running with JGI EST. | ||
*0bp away gene set. Job submitted | *0bp away gene set. Job submitted | ||
*BOTH gene set. Job submitted | |||
===Loogbook=== | ===Loogbook=== | ||
=====BLAST btwn t.at.both vs ncrna===== | =====BLAST btwn t.at.both vs ncrna===== | ||
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</code> | </code> | ||
=====Augustus BOTH set===== | |||
******************Preparando | |||
==Extras== | ==Extras== | ||
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Revision as of 14:37, 12 September 2012
Gene Expression and Development in Fungi | <html><img src="http://openwetware.org/images/9/94/Report.png" border="0" /></html> Main project page <html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>Previous entry<html> </html>Next entry<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html> |
Trichoderma & P. vulgaris interactionThings to doThings doneLoogbookIntergenic sequences in T.atrovirideThings to do
Things done
LoogbookBLAST btwn t.at.both vs ncrna
Augus pred vs TrichodermaFrozen
BLAST e-value 1e-3In order to get more hits I run blast again. e-value 1e-3. It is made just in case. Between Agustus predicted and T.at.v2.aa JGI ESTs trainning
Prediction of 0bp awayMade with parameters given by training. With personal isotigs.fna Submission
Results
Augustus BOTH set
Extras |