User:Jonathan Cline/Notebook/Melaminometer/Specific Sequences
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Melamine degradation pathway
Melamine deaminase (Acidovorax avenae subsp. citrulli)
Protein sequence
>gi|11890745|gb|AAG41202.1|AF312304_1 melamine deaminase [Acidovorax avenae subsp. citrulli] MQTLSIQHGTLVTMDQYRRVLGDSWVHVQDGRIVALGVHAESVPPPADRVIDARGKVVLPGFINAHTHVN QILLRGGPSHGRQLYDWLFNVLYPGQKAMRPEDVAVAVRLYCAEAVRSGITTINDNADSAIYPGNIEAAM AVYGEVGVRVVYARMFFDRMDGRIQGYVDALKARSPQVELCSIMEETAVAKDRITALSDQYHGTAGGRIS VWPAPAITPAVTVEGMRWAQAFARDRAVMWTLHMAESDHDERLHWMSPAEYMECYGLLDERLQVAHCVYF DRKDVRLLHRHNVKVASQVVSNAYLGSGVAPVPEMVERGMAVGIGTDDGNCNDSVNMIGDMKFMAHIHRA VHRDADVLTPEKILEMATIDGARSLGMDHEIGSIETGKRADLILLDLRHPQTTPHHHLAATIVFQAYGNE VDTVLIDGNVVMENRRLSFLPPERELAFLEEAQSRATAILQRANMVANPAWRSL
Nucleotide sequence (1425 bp)
>gi|11890744:1-1425 Pseudomonas sp. NRRL B-12227 melamine deaminase (triA) gene, complete cds ATGCAAACGCTCAGCATCCAGCACGGTACCCTCGTCACGATGGATCAGTACCGCAGAGTCCTTGGGGATA GCTGGGTTCACGTGCAGGATGGACGGATCGTCGCGCTCGGAGTGCACGCCGAGTCGGTGCCTCCGCCAGC GGATCGGGTGATCGATGCACGCGGCAAGGTCGTGTTACCCGGTTTCATCAATGCCCACACCCATGTGAAC CAGATCCTCCTGCGCGGAGGGCCCTCGCACGGGCGTCAACTCTATGACTGGCTGTTCAACGTTTTGTATC CGGGACAAAAGGCGATGAGACCGGAGGACGTAGCGGTGGCGGTGAGGTTGTATTGTGCGGAAGCTGTGCG CAGCGGGATTACGACGATCAACGACAACGCCGATTCGGCCATCTACCCAGGCAACATCGAGGCCGCGATG GCGGTCTATGGTGAGGTGGGTGTGAGGGTCGTCTACGCCCGCATGTTCTTTGATCGGATGGACGGGCGCA TTCAAGGGTATGTGGACGCCTTGAAGGCTCGCTCTCCCCAAGTCGAACTGTGCTCGATCATGGAGGAAAC GGCTGTGGCCAAAGATCGGATCACAGCCCTGTCAGATCAGTATCATGGCACGGCAGGAGGTCGTATATCA GTTTGGCCCGCTCCTGCCATTACCCCGGCGGTGACAGTTGAAGGAATGCGATGGGCACAAGCCTTCGCCC GTGATCGGGCGGTAATGTGGACGCTTCACATGGCGGAGAGCGATCATGATGAGCGGCTTCATTGGATGAG TCCCGCCGAGTACATGGAGTGTTACGGACTCTTGGATGAGCGTCTGCAGGTCGCGCATTGCGTGTACTTT GACCGGAAGGATGTTCGGCTGCTGCACCGCCACAATGTGAAGGTCGCGTCGCAGGTTGTGAGCAATGCCT ACCTCGGCTCAGGGGTGGCCCCCGTGCCAGAGATGGTGGAGCGCGGCATGGCCGTGGGCATTGGAACAGA TGACGGGAATTGTAATGACTCCGTAAACATGATCGGAGACATGAAGTTTATGGCCCATATTCACCGCGCG GTGCATCGGGATGCGGACGTGCTGACCCCAGAGAAGATTCTTGAAATGGCGACGATCGATGGGGCGCGTT CGTTGGGAATGGACCACGAGATTGGTTCCATCGAAACCGGCAAGCGCGCGGACCTTATCCTGCTTGACCT GCGTCACCCTCAGACGACTCCTCACCATCATTTGGCGGCCACGATCGTGTTTCAGGCTTACGGCAATGAG GTGGACACTGTCCTGATTGACGGAAACGTTGTGATGGAGAACCGCCGCTTGAGCTTTCTTCCCCCTGAAC GTGAGTTGGCGTTCCTTGAGGAAGCGCAGAGCCGCGCCACAGCTATTTTGCAGCGGGCGAACATGGTGGC TAACCCAGCTTGGCGCAGCCTCTAG
Ammelide aminohydrolase (Acidovorax avenae subsp. citrulli)
Protein sequence
>gi|12644702|gb|AAK00493.1| ammelide aminohydrolase [Acidovorax avenae subsp. citrulli] MSMETHSYVDVAIRNARLADTEGIVDILIHDGRIASIVKSTKTKGSVEIDAHEGLVTSGLVEPHIHLDKA LTADRVPAGSIGDLRTRRGLEMAIRATRDIKRTFTVEDVRERAIRAALMASRAGTTALRTHVDVDPIVGL AGIRGVLEAREVCAGLIDIQIVAFPQEGLFCSAGAVDLMREAIKLGADAVGGAPALDDRPQDHVRAVFDL AAEFGLPVDMHVDESDRREDFTLPFVIEAARERRVPNVTVAHISSLSVQTDDVARSTIAALADADVNVVV NPIIVKITRLSELLDAGVSVMFGSDNLRDPFYPLGAANPLGSAIFACQIAALGTPQDLRRVFDAVTINAA RMLGFPSLLGVVEGAVADLAVFPSATPEEVVLDQQSPLFVLKGGRVVAMRLAAGSTSFRDYS
Nucleotide sequence (1239 bp)
>gi|12644694:11082-12320 Acidovorax avenae subsp. citrulli s-triazine ring-cleavage gene region ATGTCAATGGAAACCCATAGTTATGTAGACGTCGCAATTCGTAACGCGCGTCTTGCCGATACGGAGGGAA TTGTCGATATTCTTATTCACGATGGGCGCATTGCGTCCATCGTGAAGTCGACAAAAACAAAAGGATCGGT GGAGATCGATGCTCATGAGGGTCTGGTCACTTCCGGCCTGGTAGAGCCTCACATCCATCTCGATAAGGCC CTGACGGCAGATCGGGTTCCCGCAGGAAGCATTGGCGACCTTCGAACGCGACGAGGCCTTGAGATGGCAA TTCGGGCCACCCGTGATATCAAGCGTACGTTCACGGTTGAAGATGTTCGAGAACGGGCCATACGTGCGGC CCTGATGGCATCCCGTGCGGGAACCACCGCATTGCGGACACACGTCGATGTCGACCCGATTGTCGGCCTC GCAGGTATCCGTGGTGTCCTTGAGGCGCGTGAAGTCTGCGCGGGATTGATCGATATCCAGATCGTCGCCT TCCCTCAGGAGGGACTCTTCTGCTCTGCGGGGGCCGTGGACCTCATGCGGGAGGCGATCAAACTGGGCGC GGATGCCGTCGGCGGCGCACCCGCGCTGGATGATCGCCCGCAGGACCATGTCCGAGCCGTTTTTGACCTT GCTGCTGAGTTCGGCCTGCCCGTAGACATGCACGTCGATGAGTCCGACCGGCGGGAAGACTTTACGCTTC CCTTTGTGATTGAAGCTGCCCGTGAACGGCGTGTGCCCAATGTGACCGTCGCGCACATCAGCTCGCTGTC CGTACAGACGGATGACGTAGCACGGTCGACCATTGCCGCCCTTGCGGACGCCGATGTTAATGTCGTGGTT AATCCGATCATTGTCAAAATTACGCGGCTGAGTGAATTACTCGATGCCGGAGTCTCCGTAATGTTTGGCT CGGACAACCTGCGGGATCCGTTCTATCCGCTCGGAGCGGCGAATCCCCTTGGATCAGCCATTTTTGCCTG TCAAATTGCCGCGCTGGGAACACCGCAAGATCTCAGACGGGTATTCGATGCGGTCACCATCAACGCTGCC CGCATGCTGGGATTCCCCTCACTTTTAGGCGTCGTGGAAGGGGCAGTCGCGGATCTCGCAGTATTCCCAT CGGCGACGCCCGAGGAGGTTGTTCTGGATCAACAGTCTCCGCTCTTCGTACTCAAGGGCGGACGTGTCGT TGCCATGCGATTGGCCGCTGGATCAACGTCGTTCCGCGACTACTCATGA
Cyanurate degradation pathway
Cyanuric acid amidohydrolase (Acidovorax avenae subsp. citrulli)
Protein sequence
>gi|3659839|gb|AAC61577.1| cyanuric acid amidohydrolase [Acidovorax avenae subsp. citrulli] MQAQVFRVPMSNPADVSGVAKLIDEGVIRAEEVVCVLGKTEGNGCVNDFTRGYTTLAFKVYFSEKLGVSR QEVGERIAFIMSGGTEGVMAPHCTIFTVQKTDNKQKTAAEGKRLAVQQIFTREFLPEEIGRMPQVTETAD AVRRAMREAGIADASDVHFVQVKCPLLTAGRMHDAVERGHTVATEDTYESMGYSRGASALGIALALGEVE KANLSDEVITADYSLYSSVASTSAGIELMNNEIIVMGNSRAWGGDLVIGHAEMKDAIDGAAVRQALRDVG CCENDLPTVDELGRVVNVFAKAEASPDGEVRNRRHTMLDDSDINSTRHARAVVNAVIASIVGDPMVYVSG GSEHQGPAGGGPVAVIARTA
Nucleotide sequence (1113 bp)
>gi|12644694:8966-10078 Acidovorax avenae subsp. citrulli s-triazine ring-cleavage gene region ATGCAAGCGCAAGTTTTTCGAGTTCCAATGAGTAATCCAGCCGATGTTAGTGGCGTAGCCAAGCTCATCG ATGAGGGAGTGATCCGTGCCGAAGAGGTCGTCTGCGTTCTCGGCAAGACCGAAGGCAACGGCTGTGTCAA TGACTTCACGCGTGGCTACACCACCCTCGCGTTCAAGGTCTACTTCTCCGAGAAACTGGGCGTGTCCCGG CAAGAGGTCGGCGAGCGCATCGCTTTCATCATGTCCGGCGGTACCGAAGGCGTCATGGCGCCTCACTGCA CCATCTTCACCGTGCAGAAGACGGACAACAAGCAGAAGACCGCCGCTGAAGGCAAGCGACTTGCCGTTCA GCAGATCTTTACCCGCGAGTTCCTGCCGGAGGAGATCGGCCGCATGCCGCAGGTCACGGAAACAGCCGAC GCTGTTCGCCGCGCCATGCGCGAAGCCGGCATCGCGGATGCATCCGATGTCCACTTCGTTCAGGTCAAGT GCCCACTGCTCACTGCCGGCCGCATGCATGACGCTGTCGAGCGCGGGCATACGGTTGCCACCGAAGATAC CTATGAGTCCATGGGCTACTCCCGCGGCGCATCCGCGCTTGGTATCGCCCTGGCCCTCGGGGAAGTCGAG AAGGCCAACCTCAGTGATGAAGTTATTACCGCAGACTACAGTCTCTACTCCTCGGTTGCCTCAACTTCGG CGGGTATCGAGTTGATGAACAACGAGATCATCGTCATGGGCAACAGCCGCGCATGGGGTGGTGACCTCGT CATCGGCCACGCCGAGATGAAGGACGCCATCGACGGTGCAGCGGTCCGGCAGGCCCTGCGCGACGTCGGG TGCTGCGAGAACGACCTGCCGACCGTCGACGAGCTCGGCCGCGTGGTCAATGTATTTGCCAAGGCTGAAG CCTCCCCGGACGGTGAGGTTCGTAACCGCCGCCACACGATGCTGGACGATTCGGACATTAACAGCACGCG CCATGCGCGAGCGGTCGTCAATGCAGTTATCGCTTCGATCGTGGGAGATCCCATGGTTTATGTCTCCGGC GGCTCCGAGCATCAGGGCCCCGCCGGTGGCGGTCCCGTTGCAGTTATCGCGCGCACAGCTTAA
Biuret hydrolase (Pseudomonas sp. ADP)
Protein sequence
>gi|13937521|gb|AAK50332.1|U66917_101 biuret hydrolase [Pseudomonas sp. ADP] MKTVEIIEGIASGRTSARDVCEEALATIGATDGLINAFTCRTVERARAEADAIDVRRARGEVLPPLAGLP YAVKNLFDIEGVTTLAGSKINRTLPPARADAVLVQRLKAAGAVLLGGLNMDEFAYGFTTENTHYGPTRNP HDTGRIAGGSSGGSGAAIAAGQVPLSLGSDTNGSIRVPASLCGVWGLKPTFGRLSRRGTYPFVHSIDHLG PLADSVEGLALAYDAMQGPDPLDPGCSASRIQPSVPVLSQGIAGLRIGVLGGWFRDNAGPAARAAVDVAA LTLGASEVVMWPDAEIGRAAAFVITASEGGCLHLDDLRIRPQDFEPLSVDRFISGVLQPVAWYLRAQRFR RVYRDKVNALFRDWDILIAPATPISAPAIGTEWIEVNGTRHPCRPAMGLLTQPVSFAGCPVVAAPTWPGE NDGMPIGVQLIAAPWNESLCLRAGKVLQDTGIARLKC
Nucleotide sequence (1374 bp)
>gi|13937422:102427-103800 Pseudomonas sp. ADP atrazine catabolic plasmid pADP-1, complete sequence ATGAAGACAGTAGAAATTATTGAAGGTATCGCCTCTGGCAGAACCAGTGCGCGCGACGTGTGCGAAGAGG CGCTCGCAACCATCGGCGCGACCGATGGACTCATCAATGCCTTTACATGCCGTACGGTTGAACGAGCCCG CGCAGAGGCGGATGCCATCGATGTTCGACGGGCGCGCGGCGAGGTACTTCCGCCTCTTGCCGGCCTCCCC TACGCGGTAAAGAATCTGTTCGACATCGAAGGCGTGACGACGCTTGCCGGCTCGAAGATCAACCGTACTC TCCCGCCTGCGCGCGCAGACGCCGTGCTGGTGCAACGGCTGAAAGCTGCCGGCGCCGTGCTCCTGGGCGG CCTCAATATGGACGAGTTTGCCTATGGATTTACGACCGAAAATACGCACTATGGGCCGACCCGGAACCCG CATGACACCGGGCGTATCGCTGGTGGTTCGTCAGGGGGGTCTGGAGCGGCAATCGCTGCGGGGCAGGTAC CACTATCGCTCGGATCGGACACCAACGGTTCCATACGCGTGCCAGCATCATTGTGTGGCGTGTGGGGGCT GAAGCCTACCTTCGGCCGCCTGTCCCGGCGAGGGACATACCCGTTTGTTCACAGCATTGATCACCTCGGG CCATTGGCCGATAGCGTGGAAGGCTTGGCGTTGGCCTACGATGCAATGCAGGGCCCGGATCCGCTCGACC CCGGATGCAGCGCATCGCGCATCCAACCCTCGGTACCGGTCCTCAGTCAGGGTATCGCTGGGCTCCGGAT CGGCGTGCTGGGTGGCTGGTTTCGGGACAATGCCGGCCCGGCCGCGCGAGCCGCGGTCGATGTTGCCGCG CTTACGCTCGGCGCCAGCGAAGTCGTCATGTGGCCCGACGCGGAGATCGGGCGCGCAGCCGCCTTCGTTA TCACTGCCAGCGAGGGAGGCTGTCTGCATCTCGATGATCTTCGCATCCGTCCGCAAGACTTCGAGCCTCT GTCCGTAGATCGCTTTATCTCGGGGGTTTTACAACCGGTCGCGTGGTACTTGCGTGCACAGCGGTTTCGA CGTGTCTATCGAGATAAGGTGAATGCTCTTTTCCGTGACTGGGACATATTAATCGCTCCCGCAACGCCAA TAAGTGCTCCCGCAATCGGCACCGAATGGATCGAGGTAAACGGTACACGCCATCCGTGCCGCCCGGCTAT GGGACTTCTCACTCAGCCGGTCTCCTTCGCAGGCTGTCCGGTGGTCGCCGCTCCAACGTGGCCTGGAGAA AACGATGGCATGCCGATCGGGGTACAGCTCATCGCGGCGCCCTGGAACGAATCTCTATGCCTGCGCGCAG GCAAGGTATTACAAGACACCGGTATCGCCCGACTGAAATGTTAA
Allophanate hydrolase (Pseudomonas sp. ADP)
Protein sequence
>gi|13937522|gb|AAK50333.1|U66917_102 allophanate hydrolase [Pseudomonas sp. ADP] MNDRAPHPERSGRVTPDHLTDLASYQAAYAAGTDAADVISDLYARIKEDGENPIWISLLPLESALAMLAD AQQRKDKGEALPLFGIPFGVKDNIDVAGLPTTAGCTGFARTPRQHAFVVQRLVDAGAIPIGKTNLDQFAT GLNGTRTPFGIPRCVFNENYVSGGSSSGSAVAVANGTVPFSLGTDTAGSGRIPAAFNNLVGLKPTKGLFS GSGLVPAARSLDCISVLAHTVDDALAVARVAAGYDADDAFSRKAGAAALTEKSWPRRFNFGVPAAEHRQF FGDAEAEALFNKAVRKLEEMGGTCISFDYTPFRQAAELLYAGPWVAERLAAIESLADEHPEVLHPVVRDI ILSAKRMSAVDTFNGIYRLADLVRAAESTWEKIDVMLLPTAPTIYTVEDMLADPVRLNSNLGFYTNFVNL MDLSAIAVPAGFRTNGLPFGVTFIGRAFEDGAIASLGKAFVEHDLAKGNAATAAPPKDTVAIAVVGAHLS DQPLNHQLTESGGKLRATTRTAPGYALYALRDATPAKPGMLRDQNAVGSIEVEIWDLPVAGFGAFVSEIP APLGIGTITLEDGSHVKGFLCEPHAIETALDITHYGGWRAYLAAQ
Nucleotide sequence (1818 bp)
>gi|13937422:104283-106100 Pseudomonas sp. ADP atrazine catabolic plasmid pADP-1, complete sequence ATGAATGACCGCGCGCCCCACCCTGAAAGATCTGGTCGAGTCACGCCGGATCACCTGACCGATCTGGCTT CCTATCAGGCTGCCTATGCCGCCGGTACAGACGCCGCCGACGTCATTTCGGACCTGTATGCCCGTATCAA AGAAGACGGCGAAAATCCGATCTGGATTAGCCTGTTGCCCTTGGAAAGCGCATTGGCGATGCTGGCCGAC GCGCAGCAACGCAAGGACAAGGGAGAAGCGTTGCCGCTCTTTGGCATCCCCTTCGGCGTCAAGGACAACA TCGACGTCGCAGGCCTTCCGACGACTGCCGGGTGTACGGGGTTCGCGCGTACGCCCCGACAGCACGCCTT CGTCGTACAGCGCCTGGTGGACGCTGGCGCGATCCCGATCGGAAAAACGAACCTCGATCAATTCGCGACC GGGTTGAACGGCACTCGCACGCCGTTTGGCATTCCGCGCTGCGTGTTCAACGAGAACTACGTATCCGGCG GCTCCAGCAGTGGCTCCGCAGTGGCCGTCGCCAACGGCACGGTACCGTTCTCGCTCGGGACGGACACTGC CGGTTCCGGCCGCATTCCTGCTGCGTTCAACAATCTGGTGGGCTTGAAACCGACCAAAGGCCTGTTCTCG GGCAGTGGACTGGTTCCCGCGGCGCGAAGCCTTGACTGCATCAGCGTCCTCGCCCATACCGTAGATGACG CCCTTGCGGTCGCACGCGTCGCCGCCGGCTACGATGCTGATGACGCTTTTTCGCGCAAGGCGGGCGCCGC CGCACTGACAGAAAAGAGTTGGCCTCGTCGCTTCAATTTCGGGGTCCCAGCGGCGGAACATCGCCAGTTT TTCGGTGACGCGGAAGCCGAGGCGCTTTTCAATAAAGCGGTTCGCAAGCTTGAAGAGATGGGTGGCACCT GCATCTCGTTTGACTATACCCCCTTCAGGCAGGCTGCTGAACTGCTCTACGCCGGCCCTTGGGTTGCGGA GCGCCTGGCGGCCATCGAGAGCCTTGCGGACGAGCATCCCGAGGTGCTCCACCCGGTCGTTCGTGACATC ATCTTGTCCGCGAAGCGAATGAGCGCAGTCGACACGTTCAACGGTATCTATCGCCTGGCCGACCTTGTCA GGGCTGCAGAGAGCACTTGGGAAAAGATCGATGTGATGCTGCTGCCGACGGCGCCGACCATCTACACTGT AGAAGACATGCTCGCCGATCCGGTACGCCTCAACAGCAATCTGGGCTTCTACACGAACTTCGTGAACTTG ATGGATTTGTCCGCGATTGCTGTTCCCGCAGGCTTCCGAACCAATGGCCTGCCATTTGGCGTCACTTTCA TCGGTCGGGCGTTCGAAGATGGGGCGATCGCAAGCTTGGGAAAAGCTTTCGTGGAGCACGACCTCGCCAA GGGCAACGCGGCCACGGCGGCGCCACCCAAGGATACCGTCGCAATCGCCGTGGTAGGTGCACATCTCTCC GACCAGCCCTTGAATCATCAGCTCACGGAGAGCGGCGGAAAGCTACGGGCAACAACGCGTACTGCGCCGG GATATGCCTTGTACGCACTCCGTGATGCGACGCCGGCTAAGCCTGGAATGTTGCGCGACCAGAATGCGGT CGGGAGCATCGAAGTGGAAATCTGGGATCTGCCGGTCGCCGGGTTCGGTGCGTTTGTAAGTGAAATTCCG GCGCCGTTGGGTATCGGGACAATAACACTCGAAGACGGCAGCCATGTGAAAGGCTTTCTGTGCGAGCCAC ATGCCATCGAGACGGCGCTCGACATCACTCACTACGGCGGCTGGCGAGCATACCTCGCGGCTCAATAG
