User:John Cumbers: Difference between revisions
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<font size="4">John Cumbers</font size> | <font size="4">John Cumbers, Ph.D</font size> | ||
<font size="2"> | <font size="2">NASA Ames Research Center<br> | ||
Mail Stop 239-20, Bldg N239 Rm 373 <br> | |||
P.O. Box 1, Moffett Field, CA 94035-0001, USA. <br> | |||
cell +1 (401) 523 8190, office +1 (650) 604-1914, fax +1 (650) 604-1088 <br> | |||
myname @ gmail . com | |||
</font size> | |||
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I work at NASA Ames Research Center in Silicon Valley, California. I helped to start NASA's program in synthetic biology and I now work at NASA in partnerships and project management. | |||
== Research Interests == | == Research Interests == | ||
<blockquote> | <blockquote> | ||
* | *Synthetic biology with applications to space settlement | ||
* | *Radiation and cold tolerance in cyanobacteria | ||
* | *Mechanisms of aging | ||
</blockquote> | </blockquote> | ||
== Education== | == Education== | ||
<blockquote>M.Sc, University of Edinburgh, | <blockquote> | ||
B.Sc, University of Hull, | |||
Ph.D (2011) Cellular Biology, Molecular Biology and Biochemistry, Brown University, USA. <br> | |||
M.Sc (2005) Bioinformatics, University of Edinburgh, UK. <br> | |||
B.Sc (2004) Computer Science & Information Engineering, University of Hull, UK. <br> | |||
</blockquote> | </blockquote> | ||
== Publications == | == Publications == | ||
<blockquote> | <blockquote> | ||
'''Measuring the activity of BioBrick promoters using an in vivo reference standard'''<br> | |||
''Journal of Biological Engineering,'' 2009 March 20;3:4<br> | |||
[[Jason_Kelly | Jason R Kelly]], Adam J Rubin, Caroline M Ajo-Franklin, John Cumbers, Michael J. Czar, Kim de Mora, Aaron L Glieberman, Dileep D Monie, [[Drew Endy]]<br> | |||
[http://www.jbioleng.org/content/3/1/4 URL] [http://www.jbioleng.org/content/pdf/1754-1611-3-4.pdf PDF reprint] <br><br> | |||
'''Drosophila Germ Line Modulation of Insulin Signaling and Lifespan''' <br> | |||
Flatt, T., Min, K., D’Alterio, C., Villa-Cuesta, E., Cumbers, J., Lehmann,R., Jones, D.L., Tatar,M.,<br> | |||
PNAS April 29, 2008 vol. 105 no. 17 6368-6373. <br><br> | |||
'''Progress toward construction and modelling of a tri-stable toggle switch in E. coli''' <br> | |||
Lohmueller, J.; Neretti, N.; Hickey, B.; Kaka, A.; Gao, A.; Lemon, J.; Lattanzi, V.; Goldstein, P.; <br> | |||
Tam, L.K.; Schmidt, M.; Brodsky, A.S.; Haberstroh, K.; Morgan, J.; Palmore, T.; Wessel, G.; | |||
Jaklenec, A.; Urabe, H.; Gagnon, J.; Cumbers <br> | |||
IET Synthetic Biology, 2007. <br><br> | |||
'''Annual Report for the American Federation for Aging Research.''' <br> | |||
2006 (Front Cover: Insulin vesicles in the fruit fly brain, confocal microscopy, Left) <br><br> | |||
==Conference posters and abstracts== | |||
BioSysBio 2007: Conference in Systems Biology, | |||
Bioinformatics and Synthetic Biology Manchester, UK. | |||
11-13 January 2007. Abstracts. Editor. | |||
BMC Syst Biol. 2007;1 Suppl 1:P1-S15. | |||
Constructing a insulin sensitive cell, second international | |||
conference on synthetic biology (2.0). Poster | |||
UC Berkeley. 2006 | |||
Computational Analysis of Insulin in the Ageing Fruit Fly | |||
Cumbers, J., and Armstrong, J.D. | |||
Abstract from BioSysBio 2005: Bioinformatics and Systems Biology Conference, Edinburgh, UK, | |||
BMC Bioinformatics 2005, 6(Suppl 3):P9 doi:10.1186/1471-2105-6-S3-P9 | |||
BioSysBio: Bioinformatics and Systems Biology Conference. Edinburgh, UK. 14-15 July 2005. Abstracts. | BioSysBio: Bioinformatics and Systems Biology Conference. Edinburgh, UK. 14-15 July 2005. Abstracts. | ||
[http://www.biomedcentral.com/content/files/pdf/1471-2105-6-S3-full.pdf BMC Bioinformatics. 2005 Sep 9;6 Suppl 3:P21-29, S1-15.] | [http://www.biomedcentral.com/content/files/pdf/1471-2105-6-S3-full.pdf BMC Bioinformatics. 2005 Sep 9;6 Suppl 3:P21-29, S1-15.] | ||
| Line 40: | Line 82: | ||
</blockquote> | </blockquote> | ||
== | ==[[Cumbers:Software | Software]]== | ||
==[[Cumbers:Science mutterings | Science mutterings]]== | |||
==[[Cumbers:OWW mutterings | OWW mutterings]]== | |||
==[[Cumbers:General mutterings | General mutterings]]== | |||
== | ==[[Cumbers:Protocols| protocols]]== | ||
== | |||
== Brown iGEM == | == Brown iGEM == | ||
*[http://parts2.mit.edu/wiki/index.php/Brown Brown iGEM team] | *[http://parts2.mit.edu/wiki/index.php/Brown Brown iGEM team] | ||
<html> | <html> | ||
<a href="http://www.openwetware.org"><img src="http://openwetware.org/images/a/a3/Join_OWW_horiz.png" border=0> | <a href="http://www.openwetware.org"><img src="http://openwetware.org/images/a/a3/Join_OWW_horiz.png" border=0> | ||
</html> | </html> | ||
Latest revision as of 18:34, 23 October 2011
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NASA Ames Research Center myname @ gmail . com |
I work at NASA Ames Research Center in Silicon Valley, California. I helped to start NASA's program in synthetic biology and I now work at NASA in partnerships and project management.
Research Interests
- Synthetic biology with applications to space settlement
- Radiation and cold tolerance in cyanobacteria
- Mechanisms of aging
Education
Ph.D (2011) Cellular Biology, Molecular Biology and Biochemistry, Brown University, USA.
M.Sc (2005) Bioinformatics, University of Edinburgh, UK.
B.Sc (2004) Computer Science & Information Engineering, University of Hull, UK.
Publications
Measuring the activity of BioBrick promoters using an in vivo reference standard
Journal of Biological Engineering, 2009 March 20;3:4
Jason R Kelly, Adam J Rubin, Caroline M Ajo-Franklin, John Cumbers, Michael J. Czar, Kim de Mora, Aaron L Glieberman, Dileep D Monie, Drew Endy
URL PDF reprint
Drosophila Germ Line Modulation of Insulin Signaling and Lifespan
Flatt, T., Min, K., D’Alterio, C., Villa-Cuesta, E., Cumbers, J., Lehmann,R., Jones, D.L., Tatar,M.,
PNAS April 29, 2008 vol. 105 no. 17 6368-6373.
Progress toward construction and modelling of a tri-stable toggle switch in E. coli
Lohmueller, J.; Neretti, N.; Hickey, B.; Kaka, A.; Gao, A.; Lemon, J.; Lattanzi, V.; Goldstein, P.;
Tam, L.K.; Schmidt, M.; Brodsky, A.S.; Haberstroh, K.; Morgan, J.; Palmore, T.; Wessel, G.; Jaklenec, A.; Urabe, H.; Gagnon, J.; Cumbers
IET Synthetic Biology, 2007.
Annual Report for the American Federation for Aging Research.
2006 (Front Cover: Insulin vesicles in the fruit fly brain, confocal microscopy, Left)
Conference posters and abstracts
BioSysBio 2007: Conference in Systems Biology, Bioinformatics and Synthetic Biology Manchester, UK. 11-13 January 2007. Abstracts. Editor. BMC Syst Biol. 2007;1 Suppl 1:P1-S15.
Constructing a insulin sensitive cell, second international conference on synthetic biology (2.0). Poster UC Berkeley. 2006
Computational Analysis of Insulin in the Ageing Fruit Fly Cumbers, J., and Armstrong, J.D. Abstract from BioSysBio 2005: Bioinformatics and Systems Biology Conference, Edinburgh, UK, BMC Bioinformatics 2005, 6(Suppl 3):P9 doi:10.1186/1471-2105-6-S3-P9
BioSysBio: Bioinformatics and Systems Biology Conference. Edinburgh, UK. 14-15 July 2005. Abstracts. BMC Bioinformatics. 2005 Sep 9;6 Suppl 3:P21-29, S1-15. PMID: 16219110 [PubMed - indexed for MEDLINE]
Software
Science mutterings
OWW mutterings
General mutterings
protocols
Brown iGEM
<html> <a href="http://www.openwetware.org"><img src="http://openwetware.org/images/a/a3/Join_OWW_horiz.png" border=0> </html>
