User:Jmuhlich/ICSB 2008 SBWiki presentation: Difference between revisions

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<h2>''A semantic structured wiki for systems biology research''</h2>
<h2>''A semantic structured wiki for systems biology research''</h2>


<h2>''[[User:Jmuhlich|Jeremy Muhlich]]''</h2>
''[[User:Jmuhlich|Jeremy Muhlich]]''
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<div class="slide">
<div class="slide">
=Design=
=Design=
[[Image:mibbi.png|300px]]
[[Image:sbwiki toplevel.png]]
[[Image:sbwiki toplevel.png]]
Overall structure based on [MIBBI http://mibbi.sourceforge.net/] (Minimum Information for Biological and Biomedical Investigations)
</div>
</div>


Revision as of 01:05, 23 August 2008


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SBWiki

A semantic structured wiki for systems biology research

Jeremy Muhlich


Current Practice

raw spreadsheets & SBML hairballs


New Standards Help...

This is sound Computer Science theory, but to biologists it's just mapping one hairball onto another!


SB-Wiki: Practical Documentation

  • Annotate early, during research not after
  • Use concepts from existing standards
  • Rigorously apply "80/20" rule


Benefits

  • Group consensus documentation, collaboration
  • Easy sharing
  • Change tracking / history preservation


Design

Overall structure based on [MIBBI http://mibbi.sourceforge.net/] (Minimum Information for Biological and Biomedical Investigations)


==


==


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