User:Jarle Pahr/Systems biology: Difference between revisions
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=Persons/research labs= | |||
Bernhard Ø Palsson: http://gcrg.ucsd.edu/Researchers/Palsson | |||
=Databases= | |||
TF checkpoint: http://norstore-trd-bio0.hpc.ntnu.no/ | TF checkpoint: http://norstore-trd-bio0.hpc.ntnu.no/ | ||
Software | =Software= | ||
Gene2Pathway: http://www.bioconductor.org/packages/2.11/bioc/html/gene2pathway.html | Gene2Pathway: http://www.bioconductor.org/packages/2.11/bioc/html/gene2pathway.html | ||
Revision as of 06:28, 13 April 2013
Notes on Systems Biology topics and software
Persons/research labs
Bernhard Ø Palsson: http://gcrg.ucsd.edu/Researchers/Palsson
Databases
TF checkpoint: http://norstore-trd-bio0.hpc.ntnu.no/
Software
Gene2Pathway: http://www.bioconductor.org/packages/2.11/bioc/html/gene2pathway.html
OpenCOBRA: http://opencobra.sourceforge.net/openCOBRA/Welcome.html
http://sourceforge.net/projects/opencobra/
PyCobra developer forum: http://sourceforge.net/projects/opencobra/forums/forum/1841961
OpenCOBRA forums: http://sourceforge.net/projects/opencobra/forums
Metabolic modelling
Models
RECON 2: http://www.nature.com/nbt/journal/vaop/ncurrent/full/nbt.2488.html
Bibliography
In silico method for modelling metabolism and gene product expression at genome scale: http://www.nature.com/ncomms/journal/v3/n7/full/ncomms1928.html
