User:Jarle Pahr/Synthetic biology: Difference between revisions
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Synthetic biology map: http://www.synbioproject.org/sbmap/ | Synthetic biology map: http://www.synbioproject.org/sbmap/ | ||
http://openwetware.org/wiki/Forster_Lab | |||
=Bibliography= | =Bibliography= |
Revision as of 05:39, 5 May 2013
Notes on news and articles related to synthetic biology:
RNA-guided editing of bacterial genomes using CRISPR-Cas systems: http://www.nature.com/nbt/journal/v31/n3/full/nbt.2508.html
Amplifying genetic logic gates: http://www.sciencemag.org/content/early/2013/03/27/science.1232758.abstract
RNA processing enables predictable programming of gene expression: http://www.nature.com/nbt/journal/v30/n10/full/nbt.2355.html
Ribozyme-based insulator parts: http://www.nature.com/nbt/journal/v30/n11/full/nbt.2401.html?WT.ec_id=NBT-201211
Organizations and websites
Companies
http://greeneconomypost.com/synthetic-biology-biofuel-biochemical-company-17244.htm
Intrexon: http://www.dna.com/
Amyris
Ls9
Solazyme
Synthetic Genomics
Synthace
Blogs and commentary
http://blogs.scientificamerican.com/oscillator/
Work
http://www.indeed.co.uk/Synthetic-Biology-jobs-in-England
Concepts
Polymerases per second (POPS):
http://openwetware.org/wiki/PoPS
Design languages
GenoCAD
Eugene
Persons/Research labs
Synthetic biology map: http://www.synbioproject.org/sbmap/
http://openwetware.org/wiki/Forster_Lab
Bibliography
http://www.nature.com/nbt/journal/v27/n12/full/nbt1209-1109.html
Stacking nonenzymatic circuits for high signal gain.: http://www.ncbi.nlm.nih.gov/pubmed/23509255
Amplifying Genetic Logic gates: http://www.sciencemag.org/content/340/6132/599.abstract
Ideas
A biological PID? Input and the objective to be controlled could be levels of a protein or a metabolite. Output would be summed from the activity of three transcription units. Would need a way to create a set-point and convert the difference between the present level and the set-point to serve as input to the PID circuit.
- Proportional term. Activity is proportional to input (current level).
- Integrative term. Activity is proportional to the total input over a recent timeframe (how can this be achieved?)
- Derivative term. Activity is proportional to the change in input over a recent timeframe (how can this be achieved?)
Might be helpful to study mechanical or analog PID circuits.
Projects
http://www.kickstarter.com/projects/antonyevans/glowing-plants-natural-lighting-with-no-electricit