User:Jarle Pahr/Metabolic engineering: Difference between revisions

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Gregory Stephanopoulos
Gregory Stephanopoulos
Jay D Keasling.




Revision as of 11:46, 13 July 2013

Notes on metabolic engineering:

sb6.biobricks.org/poster/fitness-and-flux-in-bacterial-metabolism/


Tools

Copeland 2012. Computational tools for metabolic engineering: http://www.sciencedirect.com/science/article/pii/S1096717612000250

Keasling 2012. Synthetic biology and the development of tools for metabolic engineering: http://www.sciencedirect.com/science/article/pii/S1096717612000055

D. Chandran, F.T. Bergmann, H.M. Sauro. Computer-aided design of biological circuits using TinkerCell.


KEGG:


MetaCyc:


Model SEED:


BiGG:

Persons and researchg groups

Gregory Stephanopoulos

Jay D Keasling.


Journals

Metabolic Engineering: http://www.journals.elsevier.com/metabolic-engineering/


Bibliography

Synthetic biology devices as tools for metabolic engineering: http://www.sciencedirect.com/science/article/pii/S1369703X12000903

Parts plus pipes: Synthetic biology approaches to metabolic engineering: http://www.sciencedirect.com/science/article/pii/S1096717611001042

Martin, V. J. , Pitera, D. J. , Withers, S. T. , Newman, J. D. & Keasling, J. D. Engineering a mevalonate pathway in Escherichia coli for production of terpenoids. Nature Biotechnol. 21, 796–802 (2003

P.D. Karp, R. Caspi. A survey of metabolic databases emphasizing the MetaCyc family

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