User:Jarle Pahr/Genome browsers: Difference between revisions
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Seeker: http://www.nextgenetics.net/tools/browser/browser.html | Seeker: http://www.nextgenetics.net/tools/browser/browser.html | ||
STAR: http://bioinformatics.oxfordjournals.org/content/early/2013/09/27/bioinformatics.btt558.short?rss=1 | |||
=Chronological by publication year= | =Chronological by publication year= | ||
Latest revision as of 00:53, 1 October 2013
Notes on software for visualizing & browsing genomes/sequencing data:
TGAC Browser: http://tgac-browser.tgac.ac.uk/
Integrate Genome Browser: http://en.wikipedia.org/wiki/Integrated_Genome_Browser
http://seqanswers.com/wiki/GenomeBrowse
http://seqanswers.com/wiki/HawkEye
Chromosoom: http://chromozoom.org/
Genomeview: http://genomeview.org/
http://sourceforge.net/projects/genomeview/?source=directory
Jbrowse: http://gmod.org/wiki/JBrowse
Gbrowse: http://gmod.org/wiki/GBrowse
Gbrowse NGS tutorial: http://gmod.org/wiki/GBrowse_NGS_Tutorial
Jbrowse: http://jbrowse.org/
UCSC Genome Browser: http://genome.ucsc.edu/
http://genome.ucsc.edu/training.html
http://www.omixon.com/bioinformatics-for-beginners-the-ucsc-genome-browser/
UCSC genome browser tutorial. Genomics, 2008: http://www.ncbi.nlm.nih.gov/pubmed/18514479
Seeker: http://www.nextgenetics.net/tools/browser/browser.html
STAR: http://bioinformatics.oxfordjournals.org/content/early/2013/09/27/bioinformatics.btt558.short?rss=1
