User:Jarle Pahr/Data analysis: Difference between revisions
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DNA subway: http://dnasubway.iplantcollaborative.org/ | DNA subway: http://dnasubway.iplantcollaborative.org/ | ||
=Clustering= | |||
==K-means== | |||
http://arxiv.org/ftp/cs/papers/0603/0603120.pdf | |||
http://www.aaai.org/Papers/IJCAI/2007/IJCAI07-447.pdf | |||
=Bibliography= | =Bibliography= | ||
Unraveling genomic variation from next generation sequencing data: http://www.biodatamining.org/content/6/1/13 | Unraveling genomic variation from next generation sequencing data: http://www.biodatamining.org/content/6/1/13 | ||
Revision as of 14:50, 22 January 2014
Notes on tools and techniques for data analysis:
http://source.mozillaopennews.org/en-US/learning/statistically-sound-data-journalism/
Single value decomposition (SVD): http://en.wikipedia.org/wiki/Singular_value_decomposition
Prinicipal component analysis (PCA):
Learn Data Science: http://nborwankar.github.io/LearnDataScience/
Uniform, optimal signal processing of mapped deep-sequencing data: http://www.nature.com/nbt/journal/vaop/ncurrent/abs/nbt.2596.html
http://datasciencemasters.org/
Software
KNIME: http://www.knime.org/
Visualisation:
LookSeq: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2775587/
DNA subway: http://dnasubway.iplantcollaborative.org/
Clustering
K-means
http://arxiv.org/ftp/cs/papers/0603/0603120.pdf
http://www.aaai.org/Papers/IJCAI/2007/IJCAI07-447.pdf
Bibliography
Unraveling genomic variation from next generation sequencing data: http://www.biodatamining.org/content/6/1/13
