User:Jarle Pahr/Books

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(New page: Understanding bioinformatics: http://www.amazon.com/Understanding-Bioinformatics-Marketa-Zvelebil/dp/0815340249 Essential bioinformatics: http://www.amazon.com/Essential-Bioinformatics-J...)
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! Title!! Publisher/series !! Year !! Price !! Link !!  Comment
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|-
 +
| Nucleic acids || Methods in molecular biology || 1985 || - || http://link.springer.com/book/10.1385/0896030644/page/1 ||
 +
|-
 +
|PCR Protocols: Current Methods and Applications||Methods in molecular biology  (Vol 15)||1993|| [http://www.amazon.co.uk/PCR-Protocols-Current-Applications-Molecular/dp/0896032442/ref=sr_1_11?s=books&ie=UTF8&qid=1363543965&sr=1-11 £64]||http://link.springer.com/book/10.1385/0896032442/page/2 ||
 +
|-
 +
|PCR Cloning protocols, 2nd edition||Methods in molecular biology (vol 192)||2002||€129||http://www.springer.com/life+sciences/cell+biology/book/978-0-89603-969-8||Contains chapter on enzyme-free cloning and a chapter on "Using T4 DNA Polymerase to Generate Clonable PCR Products".
 +
|-
 +
|E. coli plasmid vectors|| Methods in molecular biology || 2003||$126 (Amazon) ||http://link.springer.com/book/10.1385/1592594093/page/1 ||
 +
|-
 +
|Enzymes of molecular biology|| Methods in molecular biology || 1993||£70 (Amazon) ||http://link.springer.com/book/10.1385/0896032345/page/1 ||
 +
|-
 +
|In Silico Systems Biology|| Methods in molecular biology|| 2013||$98 (Amazon) ||http://www.springer.com/life+sciences/systems+biology+and+bioinformatics/book/978-1-62703-449-4||
 +
|-
 +
|Systems Metabolic Engineering|| Methods in molecular biology || 2012||$175 (Amazon) ||http://www.springer.com/chemistry/biotechnology/book/978-1-62703-298-8||
 +
|-
 +
|Data mining for Systems Biology|| Methods in molecular biology || 2013||$95 (Springer) || http://www.springer.com/life+sciences/systems+biology+and+bioinformatics/book/978-1-62703-106-6||
 +
|-
 +
|DNA Barcodes||Methods in molecular biology || 2012||€110 (Springer) ||http://www.springer.com/biomed/human+genetics/book/978-1-61779-590-9||
 +
|-
 +
|Microbial systems biology||Methods in molecular biology || 2012||$159.00 (Amazon) ||http://www.springer.com/life+sciences/microbiology/book/978-1-61779-826-9||Contains chapters on "Bacterial Genome Annotation", "Complex Network Analysis in Microbial Systems: Theory and Examples" (Zavareh and Almaas), "Development of Constraint-Based System-Level Models of Microbial Metabolism", "Modeling a Minimal Cell" and "Mass Spectrometry-Based Microbial Metabolomics".
 +
|-
 +
|Plant DNA fingerprinting||Methods in molecular biology || 2012||$25 (Springer MyCopy)  ||http://www.springer.com/life+sciences/plant+sciences/book/978-1-61779-608-1||
 +
|-
 +
|'''Microbial metabolic engineering'''||Methods in molecular biology || 2012||$25 (Springer MyCopy) ||http://www.springer.com/life+sciences/microbiology/book/978-1-61779-482-7||Chapters on quantifying plasmid numbers,  biolumiscent reporter genes (lux), FBA for metabolic engineering,
 +
|-
 +
|'''Synthetic Gene Networks'''||Methods in molecular biology ||2012||$25 (Springer MyCopy) || http://www.springer.com/life+sciences/systems+biology+and+bioinformatics/book/978-1-61779-411-7||Contains chapters on In Silico Implementation of Synthetic Gene Networks,Standardization in Synthetic Biology,Robust Optimal Design of Synthetic Biological Networks
 +
|-
 +
|Network Biology||Methods in molecular biology ||2011||$25 (Springer MyCopy) ||http://www.springer.com/life+sciences/systems+biology+and+bioinformatics/book/978-1-61779-275-5||
 +
|-
 +
|'''In silico Tools for Gene discovery'''||Methods in molecular biology|| 2011||$25 (Springer MyCopy) ||http://link.springer.com/book/10.1007/978-1-61779-176-5/page/1 ||
 +
|-
 +
|Light Microscopy||Methods in molecular biology|| 2011||$25 (Springer MyCopy) ||http://link.springer.com/book/10.1007/978-1-60761-950-5/page/1||
 +
|-
 +
|'''Strain Engineering'''||Methods in molecular biology|| 2011||$25 (Springer MyCopy) ||http://link.springer.com/book/10.1007/978-1-61779-197-0/page/1||Contains chapter by Lahle and Valla.
 +
|-
 +
|PCR protocols, 3d edition||Methods in molecular biology (Vol 687)|| 2011||$25 (Springer MyCopy) ||http://www.springer.com/biomed/human+genetics/book/978-1-60761-943-7||
 +
|-
 +
|'''Bioinformatics - an introduction'''||Computational Biology||2009|| $25 (Springer MyCopy)||http://www.springer.com/computer/bioinformatics/book/978-1-84800-256-2||
 +
|-
 +
|'''Heterologous Gene Expression in E.coli'''||Methods in molecular biology||2011||$25 (Springer MyCopy)||http://link.springer.com/book/10.1007/978-1-61737-967-3/page/1 ||
 +
|-
 +
|PCR Mutation Detection protocols||Methods in molecular biology||2011||$25 (Springer MyCopy)||http://link.springer.com/book/10.1007/978-1-60761-947-5/page/1 ||
 +
|-
 +
|'''Computational Biology'''||Methods in molecular biology||2010||$25 (Springer MyCopy)||http://link.springer.com/book/10.1007/978-1-60761-842-3/page/1||Contains chapters on Sequencing and Genome Assembly Using Next-Generation Technologies, Protein Structure Modeling, Template-Based Protein Structure Modeling and RNA structure prediction.
 +
|-
 +
|'''Systems Biology'''||Methods in molecular biology||2009||$25 (Springer MyCopy)||http://link.springer.com/book/10.1007/978-1-59745-525-1/page/1||Contains chapter by Navid and Almaas.
 +
|-
 +
|Design and Analysis of Biomolecular Circuits||?||2011||$25 (Springer MyCopy)||http://link.springer.com/book/10.1007/978-1-4419-6766-4/page/1||Contains chapter with discussion of SLIC, Gibson Assembly and CPEC
 +
|-
 +
|Systems Biology and Biotechnology of E coli||?||2009||€25 (Springer MyCopy)||http://link.springer.com/book/10.1007/978-1-4020-9394-4||
 +
|-
 +
|Chemical genomics - reviews and protocols|| ?||2005|| ||http://link.springer.com/book/10.1007/978-1-59259-948-6/page/1||Contains chapter on LIC for high-throughput proteomics
 +
|-
 +
|Spectroscopic Methods of Analysis||?|| || ||http://www.springer.com/medicine/radiology/book/978-1-61779-805-4
 +
|-
 +
|PCR for clinical microbiology||?||2010||€25 (Springer MyCopy)||http://link.springer.com/book/10.1007/978-90-481-9039-3//page/1
 +
|}
-
Understanding bioinformatics: http://www.amazon.com/Understanding-Bioinformatics-Marketa-Zvelebil/dp/0815340249
+
To see MyCopy prices, click "free preview".
-
Essential bioinformatics: http://www.amazon.com/Essential-Bioinformatics-Jin-Xiong/dp/0521600820#reader_0521600820
 
-
Bioinformatics Programming Using Python
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[http://link.springer.com/book/10.1385/1592598234/page/2 Oligonucleotide synthesis]
-
Practical Programming for Biological Data: http://shop.oreilly.com/product/9780596154516.do
+
-
Learning Python: http://shop.oreilly.com/product/9780596158071.do?green=E5DA2A54-B2A5-51A0-0D79-CCFE068EA9F4&intcmp=af-mybuy-9780596158071.IP
+
[http://eu.wiley.com/WileyCDA/WileyTitle/productCd-0471250929.html Short protocols in molecular biology]
 +
 
 +
[http://link.springer.com/book/10.1007/978-1-60327-411-1/page/1 Single Nucleotide Polymorphisms]
 +
 
 +
[http://www.springer.com/life+sciences/cell+biology/book/978-1-58829-378-7 Microbial Gene Essentiality: Protocols and Bioinformatics]
 +
 
 +
NCBI Bookshelf: http://www.ncbi.nlm.nih.gov/books/
 +
 
 +
[http://link.springer.com/book/10.1385/159259686X/page/1 Transcription Factor Protocols]
 +
 +
[http://www.amazon.com/Introduction-Systems-Biology-Sangdun-Choi/dp/1588297063/ref=sr_1_17?ie=UTF8&qid=1362608224&sr=8-17&keywords=In+silico+systems+biology Introduction to Systems Biology]
 +
 +
[http://www.springer.com/life+sciences/systems+biology+and+bioinformatics/book/978-81-322-1162-4 Your passport to a career in bioinformatics]
 +
 
 +
 
 +
[http://www.amazon.com/Throughput-Technologies-Sequencing-Perspectives-Bioanalysis/dp/0444522239 New High Throughput Technologies for DNA Sequencing and Genomics]
 +
 
 +
[http://www.cshlpress.com/default.tpl?cart=1362661897456468277&fromlink=T&linkaction=full&linksortby=oop_title&--eqSKUdatarq=934 Molecular Cloning - A laboratory manual. 4th edition]
 +
 
 +
 
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[http://www.amazon.com/gp/product/1584889292?ie=UTF8&tag=genedrift-20&linkCode=as2&camp=1789&creative=9325&creativeASIN=1584889292 Python for Bioinformatics]
 +
 
 +
Positive review at http://python.genedrift.org/
 +
 
 +
 
 +
'''NMR:'''
 +
 
 +
http://www.amazon.com/Nuclear-Magnetic-Resonance-Chemistry-Primers/dp/0198556829/ref=wl_it_dp_o_pdT1_S_nC?ie=UTF8&colid=H9P6V01FK49E&coliid=I3SPOPNQR7FE5Z
 +
 
 +
 
 +
http://www.amazon.com/Basic-One-Two-Dimensional-NMR-Spectroscopy/dp/3527327827/ref=wl_it_dp_o_pC_nS_nC?ie=UTF8&colid=H9P6V01FK49E&coliid=I1F8ZV98G2BMB5
 +
 
 +
'''Book series:'''
 +
 
 +
*Springer/Humana Press: Methods in molecular biology
 +
*[http://www.springer.com/series/5769?detailsPage=titles Computational biology]
 +
 
 +
 
 +
'''Prioritized shopping list:'''
 +
 
 +
Python for Bioinformatics (Sebastian Bassi).
 +
 
 +
Single Nucleotide Polymorphisms. Reason: Relevant for clinical genomics.
 +
 
 +
Bioinformatics - An introduction (€25). Reason. Background reading for bioinformatics study.
 +
 
 +
Introduction to Systems Biology.
 +
 
 +
 
 +
Introduction to population genetics: http://www.amazon.com/Introduction-Population-Genetics-Richard-Halliburton/dp/0130163805/ref=sr_1_1?s=books&ie=UTF8&qid=1366892835&sr=1-1&keywords=introduction+to+population+genetics
 +
 
 +
 
 +
 
 +
'''Prioritized learning fields:'''
 +
 
 +
Human genomics and SNPs.
 +
 
 +
Next-Generation/High-throughput sequencing and genome assembly.
 +
 
 +
Bioinformatics.
 +
 
 +
E. coli.
 +
 
 +
Systems Biology.
 +
 
 +
 
 +
Books by category:
 +
 
 +
 
 +
 
 +
Programming:
 +
 
 +
Algorithms - fourth edition. Sedgewick & Wayne: http://www.amazon.com/Algorithms-4th-Robert-Sedgewick/dp/032157351X
 +
 
 +
Linux Bible: http://www.amazon.com/dp/111821854X
 +
 
 +
UNIX and Perl to the rescue: http://www.amazon.com/UNIX-Perl-Rescue-Sciences-Data-rich/dp/0521169828
 +
 
 +
Bioinformatics:
 +
 
 +
EMBOSS Developer's Guide: http://www.amazon.com/EMBOSS-Developers-Guide-Bioinformatics-Programming/dp/0521607248
 +
 
 +
General:
 +
 
 +
Spriner series in operational research - Numerical Optimization: http://www.amazon.com/Numerical-Optimization-Operations-Financial-Engineering/dp/0387303030
 +
 
 +
http://www.amazon.com/Production-Programming-Operations-Financial-Engineering/dp/0387299599
 +
 
 +
http://www.freescience.info/index.php
 +
 
 +
Introduction to Biological Networks: http://www.crcpress.com/product/isbn/9781584884637
 +
 
 +
Pratical Bioinformatics: http://www.amazon.com/Practical-Bioinformatics-Michael-Agostino/dp/0815344562
 +
 
 +
http://www.amazon.com/Phylogenomics-A-Primer-Rob-Desalle/dp/081534211X/ref=pd_sim_b_4
 +
 
 +
http://www.amazon.com/Molecular-Biology-Christs-Cambridge-University/dp/0123785944
 +
 
 +
Genome Science: http://www.amazon.com/Genome-Science-David-Micklos/dp/0879698594/ref=sr_1_1?ie=UTF8&qid=1368105611&sr=8-1&keywords=Genome+Science
 +
 
 +
http://www.amazon.com/Handbook-Molecular-Cellular-Methods-Medicine/dp/1420069381
 +
 
 +
http://sweepingzen.com/fundraiser-for-shohaku-okumuras-updated-homeless-kodo-this-may-12th/

Current revision

Title Publisher/series Year Price Link Comment
Nucleic acids Methods in molecular biology 1985 - http://link.springer.com/book/10.1385/0896030644/page/1
PCR Protocols: Current Methods and ApplicationsMethods in molecular biology (Vol 15)1993 £64http://link.springer.com/book/10.1385/0896032442/page/2
PCR Cloning protocols, 2nd editionMethods in molecular biology (vol 192)2002€129http://www.springer.com/life+sciences/cell+biology/book/978-0-89603-969-8Contains chapter on enzyme-free cloning and a chapter on "Using T4 DNA Polymerase to Generate Clonable PCR Products".
E. coli plasmid vectors Methods in molecular biology 2003$126 (Amazon) http://link.springer.com/book/10.1385/1592594093/page/1
Enzymes of molecular biology Methods in molecular biology 1993£70 (Amazon) http://link.springer.com/book/10.1385/0896032345/page/1
In Silico Systems Biology Methods in molecular biology 2013$98 (Amazon) http://www.springer.com/life+sciences/systems+biology+and+bioinformatics/book/978-1-62703-449-4
Systems Metabolic Engineering Methods in molecular biology 2012$175 (Amazon) http://www.springer.com/chemistry/biotechnology/book/978-1-62703-298-8
Data mining for Systems Biology Methods in molecular biology 2013$95 (Springer) http://www.springer.com/life+sciences/systems+biology+and+bioinformatics/book/978-1-62703-106-6
DNA BarcodesMethods in molecular biology 2012€110 (Springer) http://www.springer.com/biomed/human+genetics/book/978-1-61779-590-9
Microbial systems biologyMethods in molecular biology 2012$159.00 (Amazon) http://www.springer.com/life+sciences/microbiology/book/978-1-61779-826-9Contains chapters on "Bacterial Genome Annotation", "Complex Network Analysis in Microbial Systems: Theory and Examples" (Zavareh and Almaas), "Development of Constraint-Based System-Level Models of Microbial Metabolism", "Modeling a Minimal Cell" and "Mass Spectrometry-Based Microbial Metabolomics".
Plant DNA fingerprintingMethods in molecular biology 2012$25 (Springer MyCopy) http://www.springer.com/life+sciences/plant+sciences/book/978-1-61779-608-1
Microbial metabolic engineeringMethods in molecular biology 2012$25 (Springer MyCopy) http://www.springer.com/life+sciences/microbiology/book/978-1-61779-482-7Chapters on quantifying plasmid numbers, biolumiscent reporter genes (lux), FBA for metabolic engineering,
Synthetic Gene NetworksMethods in molecular biology 2012$25 (Springer MyCopy) http://www.springer.com/life+sciences/systems+biology+and+bioinformatics/book/978-1-61779-411-7Contains chapters on In Silico Implementation of Synthetic Gene Networks,Standardization in Synthetic Biology,Robust Optimal Design of Synthetic Biological Networks
Network BiologyMethods in molecular biology 2011$25 (Springer MyCopy) http://www.springer.com/life+sciences/systems+biology+and+bioinformatics/book/978-1-61779-275-5
In silico Tools for Gene discoveryMethods in molecular biology 2011$25 (Springer MyCopy) http://link.springer.com/book/10.1007/978-1-61779-176-5/page/1
Light MicroscopyMethods in molecular biology 2011$25 (Springer MyCopy) http://link.springer.com/book/10.1007/978-1-60761-950-5/page/1
Strain EngineeringMethods in molecular biology 2011$25 (Springer MyCopy) http://link.springer.com/book/10.1007/978-1-61779-197-0/page/1Contains chapter by Lahle and Valla.
PCR protocols, 3d editionMethods in molecular biology (Vol 687) 2011$25 (Springer MyCopy) http://www.springer.com/biomed/human+genetics/book/978-1-60761-943-7
Bioinformatics - an introductionComputational Biology2009 $25 (Springer MyCopy)http://www.springer.com/computer/bioinformatics/book/978-1-84800-256-2
Heterologous Gene Expression in E.coliMethods in molecular biology2011$25 (Springer MyCopy)http://link.springer.com/book/10.1007/978-1-61737-967-3/page/1
PCR Mutation Detection protocolsMethods in molecular biology2011$25 (Springer MyCopy)http://link.springer.com/book/10.1007/978-1-60761-947-5/page/1
Computational BiologyMethods in molecular biology2010$25 (Springer MyCopy)http://link.springer.com/book/10.1007/978-1-60761-842-3/page/1Contains chapters on Sequencing and Genome Assembly Using Next-Generation Technologies, Protein Structure Modeling, Template-Based Protein Structure Modeling and RNA structure prediction.
Systems BiologyMethods in molecular biology2009$25 (Springer MyCopy)http://link.springer.com/book/10.1007/978-1-59745-525-1/page/1Contains chapter by Navid and Almaas.
Design and Analysis of Biomolecular Circuits?2011$25 (Springer MyCopy)http://link.springer.com/book/10.1007/978-1-4419-6766-4/page/1Contains chapter with discussion of SLIC, Gibson Assembly and CPEC
Systems Biology and Biotechnology of E coli?2009€25 (Springer MyCopy)http://link.springer.com/book/10.1007/978-1-4020-9394-4
Chemical genomics - reviews and protocols ?2005 http://link.springer.com/book/10.1007/978-1-59259-948-6/page/1Contains chapter on LIC for high-throughput proteomics
Spectroscopic Methods of Analysis? http://www.springer.com/medicine/radiology/book/978-1-61779-805-4
PCR for clinical microbiology?2010€25 (Springer MyCopy)http://link.springer.com/book/10.1007/978-90-481-9039-3//page/1

To see MyCopy prices, click "free preview".


Oligonucleotide synthesis

Short protocols in molecular biology

Single Nucleotide Polymorphisms

Microbial Gene Essentiality: Protocols and Bioinformatics

NCBI Bookshelf: http://www.ncbi.nlm.nih.gov/books/

Transcription Factor Protocols

Introduction to Systems Biology

Your passport to a career in bioinformatics


New High Throughput Technologies for DNA Sequencing and Genomics

Molecular Cloning - A laboratory manual. 4th edition


Python for Bioinformatics

Positive review at http://python.genedrift.org/


NMR:

http://www.amazon.com/Nuclear-Magnetic-Resonance-Chemistry-Primers/dp/0198556829/ref=wl_it_dp_o_pdT1_S_nC?ie=UTF8&colid=H9P6V01FK49E&coliid=I3SPOPNQR7FE5Z


http://www.amazon.com/Basic-One-Two-Dimensional-NMR-Spectroscopy/dp/3527327827/ref=wl_it_dp_o_pC_nS_nC?ie=UTF8&colid=H9P6V01FK49E&coliid=I1F8ZV98G2BMB5

Book series:


Prioritized shopping list:

Python for Bioinformatics (Sebastian Bassi).

Single Nucleotide Polymorphisms. Reason: Relevant for clinical genomics.

Bioinformatics - An introduction (€25). Reason. Background reading for bioinformatics study.

Introduction to Systems Biology.


Introduction to population genetics: http://www.amazon.com/Introduction-Population-Genetics-Richard-Halliburton/dp/0130163805/ref=sr_1_1?s=books&ie=UTF8&qid=1366892835&sr=1-1&keywords=introduction+to+population+genetics


Prioritized learning fields:

Human genomics and SNPs.

Next-Generation/High-throughput sequencing and genome assembly.

Bioinformatics.

E. coli.

Systems Biology.


Books by category:


Programming:

Algorithms - fourth edition. Sedgewick & Wayne: http://www.amazon.com/Algorithms-4th-Robert-Sedgewick/dp/032157351X

Linux Bible: http://www.amazon.com/dp/111821854X

UNIX and Perl to the rescue: http://www.amazon.com/UNIX-Perl-Rescue-Sciences-Data-rich/dp/0521169828

Bioinformatics:

EMBOSS Developer's Guide: http://www.amazon.com/EMBOSS-Developers-Guide-Bioinformatics-Programming/dp/0521607248

General:

Spriner series in operational research - Numerical Optimization: http://www.amazon.com/Numerical-Optimization-Operations-Financial-Engineering/dp/0387303030

http://www.amazon.com/Production-Programming-Operations-Financial-Engineering/dp/0387299599

http://www.freescience.info/index.php

Introduction to Biological Networks: http://www.crcpress.com/product/isbn/9781584884637

Pratical Bioinformatics: http://www.amazon.com/Practical-Bioinformatics-Michael-Agostino/dp/0815344562

http://www.amazon.com/Phylogenomics-A-Primer-Rob-Desalle/dp/081534211X/ref=pd_sim_b_4

http://www.amazon.com/Molecular-Biology-Christs-Cambridge-University/dp/0123785944

Genome Science: http://www.amazon.com/Genome-Science-David-Micklos/dp/0879698594/ref=sr_1_1?ie=UTF8&qid=1368105611&sr=8-1&keywords=Genome+Science

http://www.amazon.com/Handbook-Molecular-Cellular-Methods-Medicine/dp/1420069381

http://sweepingzen.com/fundraiser-for-shohaku-okumuras-updated-homeless-kodo-this-may-12th/

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