User:Jarle Pahr/Algorithms
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Notes on algorithms with use in bioinformatics and computational biology:
See also:
http://bix.ucsd.edu/bioalgorithms/
http://en.wikipedia.org/wiki/Category:Bioinformatics_algorithms
https://www.coursera.org/course/bioinformatics
Simplex algorithm:
Needleman–Wunsch algorithm:
http://en.wikipedia.org/wiki/Needleman%E2%80%93Wunsch_algorithm
Smith Waterman algorithm:
http://en.wikipedia.org/wiki/Smith%E2%80%93Waterman_algorithm
See also http://seqanswers.com/forums/showthread.php?t=25305 for a discussion on implementing SW.
Burrows-Wheeler transform:
Misc:
http://www.cse.sc.edu/~maxal/csce590b/Lect01-02.pdf
Books:
http://www.amazon.com/Bioinformatics-Algorithms-Techniques-Applications-Wiley/dp/0470097736