User:Jarle Pahr: Difference between revisions
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==Contact Info== | ==Contact Info== | ||
[[Image:OWWEmblem.png|thumb|right|Jarle Pahr (an artistic interpretation)]] | [[Image:OWWEmblem.png|thumb|right|Jarle Pahr (an artistic interpretation)]] | ||
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# Omega-3/poly-unsaturated fatty acid biosynthesis | # Omega-3/poly-unsaturated fatty acid biosynthesis | ||
# Metabolic engineering for biofuels production | # Metabolic engineering for biofuels production | ||
# | # Molecular genetics of lactate utilization in bacteria | ||
#Metabolic networks | |||
==Interesting articles== | |||
[http://www.ncbi.nlm.nih.gov/pubmed/21847113 Engineering microbes to sense and eradicate Pseudomonas aeruginosa, a human pathogen] | |||
[http://www.ncbi.nlm.nih.gov/pubmed/16330045 Environmentally controlled invasion of cancer cells by engineered bacteria] | |||
[http://www.ncbi.nlm.nih.gov/pubmed/18263722 Dual role of lldR in regulation of the lldPRD operon, involved in L-lactate metabolism in E. coli] | |||
[http://www.cell.com/abstract/S0092-8674%2812%2900776-3 A Whole-Cell Computational Model Predicts Phenotype from Genotype] | |||
[http://www.nature.com/nature/journal/vaop/ncurrent/full/nature11516.html Genetic programs constructed from layered logic gates in single cells] | |||
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Addgene plasmid repository: http://www.addgene.org/ | Addgene plasmid repository: http://www.addgene.org/ | ||
DNASU plasid repository: http://dnasu.asu.edu/DNASU/ | |||
[http://bionumbers.hms.harvard.edu/default.aspx The database of useful biological numbers] | |||
===Software tools=== | ===Software tools=== | ||
Revision as of 06:14, 17 October 2012
Contact Info
- Jarle Pahr
- Norwegian University of Science and Technology
jarlemag@stud.ntnu.no
Education
2007-2013: Msc., Chemical engineering & Biotechnology, Norwegian University of Science & Technology
Research interests
- Omega-3/poly-unsaturated fatty acid biosynthesis
- Metabolic engineering for biofuels production
- Molecular genetics of lactate utilization in bacteria
- Metabolic networks
Interesting articles
Engineering microbes to sense and eradicate Pseudomonas aeruginosa, a human pathogen
Environmentally controlled invasion of cancer cells by engineered bacteria
Dual role of lldR in regulation of the lldPRD operon, involved in L-lactate metabolism in E. coli
A Whole-Cell Computational Model Predicts Phenotype from Genotype
Genetic programs constructed from layered logic gates in single cells
Useful links
Databases/Repositories
PlasmID database: http://plasmid.med.harvard.edu/PLASMID/
Addgene plasmid repository: http://www.addgene.org/
DNASU plasid repository: http://dnasu.asu.edu/DNASU/
The database of useful biological numbers
Software tools
Bioinformatics & Annotation
Neural Network Promoter Prediction: http://www.fruitfly.org/seq_tools/promoter.html
Artemis genome browser: http://www.sanger.ac.uk/resources/software/artemis/
BASYS Bacterial Annotation software: http://basys.ca/
SoftBerry: http://linux1.softberry.com/berry.phtml
Promethease: http://snpedia.com/index.php/Promethease
GLIMMER microbial gene-finding system: http://www.cbcb.umd.edu/software/glimmer/
Promoter & termination site search tools: http://molbiol-tools.ca/Promoters.htm
Cloning & Construction
The Constructor: http://2011.igem.org/Team:Wageningen_UR/Softwaretool/
NEBcutter: http://tools.neb.com/NEBcutter2/
J5 automated DNA assembly: http://j5.jbei.org/index.php/Main_Page
Genome Compiler: http://www.genomecompiler.com/
Gibthon: http://django.gibthon.org/
Misc.
Misc. molecular biology freeware: http://molbiol-tools.ca/molecular_biology_freeware.htm
J Craig Venter Institute - software: http://www.jcvi.org/cms/research/software/
DNA sequence transformation tools: http://molbiol-tools.ca/Convert.htm
The Oligator: http://gcat.davidson.edu/igem10/tutorial.html
Nuclei Acid sequence massager: http://www.attotron.com/cybertory/analysis/seqMassager.htm
String functional protein interaction networks: http://string-db.org/newstring_cgi/show_input_page.pl?UserId=y_1_rGDH3F2_&sessionId=JqYi1VB4HXQn
See also: http://2012.igem.org/User_talk:Jarlemag and http://2012.igem.org/Team:NTNU_Trondheim/Links
