User:J. Antonio Ibarra: Difference between revisions

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=='''Contact Info'''==
[[Image:IMG_1867.jpg|thumb|right|J. Antonio Ibarra]]


==Contact Info==
[[Image:IMG_1867.jpg|thumb|right|J. Antonio Ibarra (an artistic interpretation)]]
*J. Antonio Ibarra
*Laboratorio de Genética Microbiana  
*Laboratorio de Genética Microbiana  
*Departamento de MIcrobiología
*Departamento de Microbiología
*Escuela Nacional de Ciencias Biologicas
*Escuela Nacional de Ciencias Biológicas
*Ciudad de México, D.F., Mexico  
*Ciudad de México, D.F., Mexico  
*jaig19@gmail.com or
*[[jaig19@gmail.com]] or [[jibarrag@ipn.mx]]
*[[Special:Emailuser/J. Antonio Ibarra|Email me through OpenWetWare]]
*[[Special:Emailuser/J. Antonio Ibarra|Email me through OpenWetWare]]


I work in the Microbial Genetics lab at National School of Biological Sciences [http://www.encb.ipn.mx/] at the National Polytechnic Institute or IPN.  I learned about [[OpenWetWare]] from A colleague friend of mine that uses this service, and I've joined because I would like to share my techniques and at the same time take advice from the scientific community worldwide. I would also like to have a permanent place to store my protocols and techniques, one that my students and collaborators can use where ever they are.
*'''Google Scholar''' :  Publications and citations [https://scholar.google.com/citations?hl=en&user=0uzUhBcAAAAJ&view_op=list_works]
*'''ResearchGate''': Publications and citations [https://www.researchgate.net/profile/Jose_Ibarra6]


==Education==
I work in the Microbial Genetics lab at the National School of Biological Sciences [http://www.encb.ipn.mx/] at the National Polytechnic Institute or IPN.  I learned about [[OpenWetWare]] from a colleague and collaborator friend of mine that uses this service.
I joined because I would like to share my techniques and at the same time take advice from the scientific community worldwide. I would also like to have a permanent place to store my protocols and techniques, one that my students and collaborators can use wherever they are.
 
=='''Education'''==
<!--Include info about your educational background-->
<!--Include info about your educational background-->
* 2011-2012, Post doctoral Fellow at the CMMB department University of South Florida [http://biology.usf.edu/cmmb/]
* 2011-2012, Post doctoral Fellow at the CMMB department University of South Florida [http://biology.usf.edu/cmmb/]
* 2006-2010, Post doctoral Fellow at the Rocky Mountain Laboratories (NIAID) [http://www.niaid.nih.gov/about/organization/dir/rml/]
* 2006-2010, Post doctoral Fellow at the Rocky Mountain Laboratories (NIAID) [http://www.niaid.nih.gov/about/organization/dir/rml/]
* 2003, PhD in Biochemistry, Institute of Biotechnology, National Autonomous University of Mexico (UNAM) [http://www.ibt.unam.mx]
* 2003, PhD in Biochemistry, Institute of Biotechnology, National Autonomous University of Mexico (UNAM) [http://www.ibt.unam.mx]
* 1996, MS in Microbiology, National School of Biological Sciences, National Polytechnique Institute (IPN)
* 1996, MS in Microbiology, National School of Biological Sciences, National Polytechnic Institute (IPN)
* 1993, BS in Microbiology, National School of Biological Sciences, National Polytechnique Institute (IPN)
* 1993, BS in Microbiology, National School of Biological Sciences, National Polytechnic Institute (IPN)


==Research interests==
=='''Research interests'''==
<!-- Feel free to add brief descriptions to your research interests as well -->
<!-- Feel free to add brief descriptions to your research interests as well -->
# Molecular Genetics of Bacteria
* Molecular Genetics of Bacteria
# Bacterial Pathogenesis
* Bacterial Pathogenesis
# Gene Regulation
* Gene Regulation
# Protein purification
* Protein purification
# Bioinformatics
* Bioinformatics
* Fungi proteases and sterol synthetases
 
=='''Collaborators'''==
 
* '''ENCB-IPN'''
* Lourdes Villa/Tanaca
* Cesar H. Hernandez-Rodriguez
* Graciela Castro-Escarpulli
* Paulina Estrada-de los Santos
 
* '''IBT-UNAM'''
* Ernesto Perez-Rueda
* Victor H. Bustamante
* Jose Luis Puente
 
* '''BUAP'''
* Cristina Lara-Ochoa
* Ygnacio Martinez-Laguna
 
* '''CMN XXI-IMSS'''
* Miguel A. De la Cruz
 
=='''Lab members/Research interests'''==
 
* Blanca Rosales / PhD Student / Ustilago maydis
* Dulce Ma. Pavon / PhD Student / Candida glabrata
* Jose Luis Cortez / PhD Student / Candida glabrata
* Elias Cortes Acosta / PhD Student / Candida glabrata
* Pedro Tesillo Moreno / MSc Student / Ustilago maydis
* Luis E. Romero / BSc Student / Salmonella Typhimurium
* Juan Figueroa / BSc Student / Salmonella Typhimurium
* Michelle / BSc Student / Salmonella Typhimurium
* Eliud Gonzalez/ BSc Student / U. maydis
* Jaqueline Lopez / Social Service


==Publications==
=='''Publications'''==
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<biblio>
<biblio>
#Paper1 pmid=23451127
#Paper1 pmid=12700263[http://www.example.com link title]
#Paper2 pmid=23442205
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#Paper5 pmid=21679290
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#Paper7 pmid=19775254
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</biblio>
</biblio>
'''Pubmed search for reference for this author''' [http://www.ncbi.nlm.nih.gov/pubmed/?term=ibarra+ja]

Revision as of 10:31, 24 September 2015

Contact Info

J. Antonio Ibarra
  • Google Scholar : Publications and citations [1]
  • ResearchGate: Publications and citations [2]

I work in the Microbial Genetics lab at the National School of Biological Sciences [3] at the National Polytechnic Institute or IPN. I learned about OpenWetWare from a colleague and collaborator friend of mine that uses this service. I joined because I would like to share my techniques and at the same time take advice from the scientific community worldwide. I would also like to have a permanent place to store my protocols and techniques, one that my students and collaborators can use wherever they are.

Education

  • 2011-2012, Post doctoral Fellow at the CMMB department University of South Florida [4]
  • 2006-2010, Post doctoral Fellow at the Rocky Mountain Laboratories (NIAID) [5]
  • 2003, PhD in Biochemistry, Institute of Biotechnology, National Autonomous University of Mexico (UNAM) [6]
  • 1996, MS in Microbiology, National School of Biological Sciences, National Polytechnic Institute (IPN)
  • 1993, BS in Microbiology, National School of Biological Sciences, National Polytechnic Institute (IPN)

Research interests

  • Molecular Genetics of Bacteria
  • Bacterial Pathogenesis
  • Gene Regulation
  • Protein purification
  • Bioinformatics
  • Fungi proteases and sterol synthetases

Collaborators

  • ENCB-IPN
  • Lourdes Villa/Tanaca
  • Cesar H. Hernandez-Rodriguez
  • Graciela Castro-Escarpulli
  • Paulina Estrada-de los Santos
  • IBT-UNAM
  • Ernesto Perez-Rueda
  • Victor H. Bustamante
  • Jose Luis Puente
  • BUAP
  • Cristina Lara-Ochoa
  • Ygnacio Martinez-Laguna
  • CMN XXI-IMSS
  • Miguel A. De la Cruz

Lab members/Research interests

  • Blanca Rosales / PhD Student / Ustilago maydis
  • Dulce Ma. Pavon / PhD Student / Candida glabrata
  • Jose Luis Cortez / PhD Student / Candida glabrata
  • Elias Cortes Acosta / PhD Student / Candida glabrata
  • Pedro Tesillo Moreno / MSc Student / Ustilago maydis
  • Luis E. Romero / BSc Student / Salmonella Typhimurium
  • Juan Figueroa / BSc Student / Salmonella Typhimurium
  • Michelle / BSc Student / Salmonella Typhimurium
  • Eliud Gonzalez/ BSc Student / U. maydis
  • Jaqueline Lopez / Social Service

Publications

  1. Ibarra JA, Villalba MI, and Puente JL. Identification of the DNA binding sites of PerA, the transcriptional activator of the bfp and per operons in enteropathogenic Escherichia coli. J Bacteriol. 2003 May;185(9):2835-47. DOI:10.1128/JB.185.9.2835-2847.2003 | PubMed ID:12700263 | HubMed [Paper1]
  2. Deng W, Puente JL, Gruenheid S, Li Y, Vallance BA, Vázquez A, Barba J, Ibarra JA, O'Donnell P, Metalnikov P, Ashman K, Lee S, Goode D, Pawson T, and Finlay BB. Dissecting virulence: systematic and functional analyses of a pathogenicity island. Proc Natl Acad Sci U S A. 2004 Mar 9;101(10):3597-602. DOI:10.1073/pnas.0400326101 | PubMed ID:14988506 | HubMed [Paper2]
  3. Gauthier A, Robertson ML, Lowden M, Ibarra JA, Puente JL, and Finlay BB. Transcriptional inhibitor of virulence factors in enteropathogenic Escherichia coli. Antimicrob Agents Chemother. 2005 Oct;49(10):4101-9. DOI:10.1128/AAC.49.10.4101-4109.2005 | PubMed ID:16189086 | HubMed [Paper3]
  4. Ibarra JA, Pérez-Rueda E, Segovia L, and Puente JL. The DNA-binding domain as a functional indicator: the case of the AraC/XylS family of transcription factors. Genetica. 2008 May;133(1):65-76. DOI:10.1007/s10709-007-9185-y | PubMed ID:17712603 | HubMed [Paper4]
  5. Ibarra JA and Steele-Mortimer O. Salmonella--the ultimate insider. Salmonella virulence factors that modulate intracellular survival. Cell Microbiol. 2009 Nov;11(11):1579-86. DOI:10.1111/j.1462-5822.2009.01368.x | PubMed ID:19775254 | HubMed [Paper5]
  6. Ibarra JA, Knodler LA, Sturdevant DE, Virtaneva K, Carmody AB, Fischer ER, Porcella SF, and Steele-Mortimer O. Induction of Salmonella pathogenicity island 1 under different growth conditions can affect Salmonella-host cell interactions in vitro. Microbiology (Reading). 2010 Apr;156(Pt 4):1120-1133. DOI:10.1099/mic.0.032896-0 | PubMed ID:20035008 | HubMed [Paper6]
  7. Knodler LA, Ibarra JA, Pérez-Rueda E, Yip CK, and Steele-Mortimer O. Coiled-coil domains enhance the membrane association of Salmonella type III effectors. Cell Microbiol. 2011 Oct;13(10):1497-517. DOI:10.1111/j.1462-5822.2011.01635.x | PubMed ID:21679290 | HubMed [Paper7]
  8. Kolar SL, Ibarra JA, Rivera FE, Mootz JM, Davenport JE, Stevens SM, Horswill AR, and Shaw LN. Extracellular proteases are key mediators of Staphylococcus aureus virulence via the global modulation of virulence-determinant stability. Microbiologyopen. 2013 Feb;2(1):18-34. DOI:10.1002/mbo3.55 | PubMed ID:23233325 | HubMed [Paper8]
  9. Gilk SD, Cockrell DC, Luterbach C, Hansen B, Knodler LA, Ibarra JA, Steele-Mortimer O, and Heinzen RA. Bacterial colonization of host cells in the absence of cholesterol. PLoS Pathog. 2013 Jan;9(1):e1003107. DOI:10.1371/journal.ppat.1003107 | PubMed ID:23358892 | HubMed [Paper9]
  10. Ibarra JA, Pérez-Rueda E, Carroll RK, and Shaw LN. Global analysis of transcriptional regulators in Staphylococcus aureus. BMC Genomics. 2013 Feb 26;14:126. DOI:10.1186/1471-2164-14-126 | PubMed ID:23442205 | HubMed [Paper10]
  11. Ibarra JA, García-Zacarias CM, Lara-Ochoa C, Carabarin-Lima A, Tecpanecatl-Xihuitl JS, Perez-Rueda E, Martínez-Laguna Y, and Puente JL. Further characterization of functional domains of PerA, role of amino and carboxy terminal domains in DNA binding. PLoS One. 2013;8(2):e56977. DOI:10.1371/journal.pone.0056977 | PubMed ID:23451127 | HubMed [Paper11]
  12. Andrade-Pavón D, Sánchez-Sandoval E, Rosales-Acosta B, Ibarra JA, Tamariz J, Hernández-Rodríguez C, and Villa-Tanaca L. The 3-hydroxy-3-methylglutaryl coenzyme-A reductases from fungi: a proposal as a therapeutic target and as a study model. Rev Iberoam Micol. 2014 Jan-Mar;31(1):81-5. DOI:10.1016/j.riam.2013.10.004 | PubMed ID:24270073 | HubMed [Paper12]
  13. Juárez-Montiel M, Ibarra JA, Chávez-Camarillo G, Hernández-Rodríguez C, and Villa-Tanaca L. Molecular cloning and heterologous expression in Pichia pastoris of X-prolyl-dipeptidyl aminopeptidase from basidiomycete Ustilago maydis. Appl Biochem Biotechnol. 2014 Mar;172(5):2530-9. DOI:10.1007/s12010-013-0682-4 | PubMed ID:24402567 | HubMed [Paper13]
  14. Weiss A, Ibarra JA, Paoletti J, Carroll RK, and Shaw LN. The δ subunit of RNA polymerase guides promoter selectivity and virulence in Staphylococcus aureus. Infect Immun. 2014 Apr;82(4):1424-35. DOI:10.1128/IAI.01508-14 | PubMed ID:24491578 | HubMed [Paper14]
  15. Ramón-Peréz ML, Diaz-Cedillo F, Ibarra JA, Torales-Cardeña A, Rodríguez-Martínez S, Jan-Roblero J, Cancino-Diaz ME, and Cancino-Diaz JC. D-Amino acids inhibit biofilm formation in Staphylococcus epidermidis strains from ocular infections. J Med Microbiol. 2014 Oct;63(Pt 10):1369-1376. DOI:10.1099/jmm.0.075796-0 | PubMed ID:25001104 | HubMed [Paper15]
  16. Ostria-Hernández ML, Sánchez-Vallejo CJ, Ibarra JA, and Castro-Escarpulli G. Survey of clustered regularly interspaced short palindromic repeats and their associated Cas proteins (CRISPR/Cas) systems in multiple sequenced strains of Klebsiella pneumoniae. BMC Res Notes. 2015 Aug 4;8:332. DOI:10.1186/s13104-015-1285-7 | PubMed ID:26238567 | HubMed [Paper16]
  17. Perez-Rueda E and Ibarra JA. Distribution of putative xenogeneic silencers in prokaryote genomes. Comput Biol Chem. 2015 Oct;58:167-72. DOI:10.1016/j.compbiolchem.2015.06.007 | PubMed ID:26247404 | HubMed [Paper17]

All Medline abstracts: PubMed | HubMed

Pubmed search for reference for this author [7]

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