User:Ilya/Notes/Software
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Data visualization
- Many Eyes - a site for sharing and commenting on visualizations by IBM
- Data360
- Swivel: YouTube for data - visualize and share your data with others
- Gapminder
- Processing is an open source programming language and environment for people who want to program images, animation, and interactions
- Visualizing Data - O'Reilly book
Application servers
Whitebeam - open source; applications are written as a set of XML pages that contain embedded JavaScript
Project management
- Planner is the GNOME project management tool
- Eventum - web-based issue tracking system developed by MySQL
Network
- EtherApe - a graphical network monitor
- Wireshark: network protocol analyzer (successor to Ethereal)
- Tor: an anonymous Internet communication system
Bibliography
Cross platform
- JabRef is an open source bibliography reference manager
Linux
- BibTeX
- Pybliographer
- Referencer is a Gnome application to organise documents or references, and ultimately generate a BibTeX bibliography file.
OS X
Miscellaneous
- Biotool2Web: Creating Simple Web Interfaces for Bioinformatics Applications
- Sedna is an open source XML-native database management system developed from scratch in C/C++ and Scheme
- Aggregate Data utilizes AJAX-based "sliders" so survey takers can choose anywhere along a spectrum of opinion
- CHM file viewers for non-Windows platforms
- Babel - convert between various formats (Excel, JSON, N3, RDF/XML, etc)