User:Ilya

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Revision as of 18:13, 25 January 2007 by Ilya (Talk | contribs)
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Graduate student in Bioinformatics at Northeastern University working in Endy Lab at MIT.

Contact: ilyas@mit.edu

Contents

Research

Current

Semantic Web Ontology for the Registry of Standard Biological Parts.

Previous

Mating pheromone response pathway analysis across yeast and related species

Activities

OpenWetWare

Notes

Software development

BioBricks aligner - aligns sequence reads (fragments) to Biobrick sequence

Lab computing

Notes

Synthetic Biology

Software

  • Biotool2Web: Creating Simple Web Interfaces for Bioinformatics Applications
  • Sedna is an open source XML-native database management system developed from scratch in C/C++ and Scheme
  • Aggregate Data utilizes AJAX-based "sliders" so survey takers can choose anywhere along a spectrum of opinion
  • CHM file viewers for non-Windows platforms
  • Tor: an anonymous Internet communication system
  • Wireshark: network protocol analyzer (successor to Ethereal)
  • Swivel: YouTube for data - visualize and share your data with others
  • Many Eyes - a site for sharing and commenting on visualizations by IBM

Application servers

  • Whitebeam - open source; applications are written as a set of XML pages that contain embedded JavaScript

Miscellaneous

Locations of visitors to this page

Personal tools