User:Ilya

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===Lab computing===
===Lab computing===
[[User:Ilya/Win.mit.edu|WIN.MIT.EDU]]
[[User:Ilya/Win.mit.edu|WIN.MIT.EDU]]
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====Data storage====
 
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*Endy lab [[Endy:Backup_solutions|backup solutions]] page
 
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*[http://itinfo.mit.edu/article.php?id=6628 MIT TSM Backup Service]
 
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**TSM software (free to MIT community per site license)
 
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**Monthly service charge: $7.50 per month per computer
 
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**TSM software is available for Windows, Mac and Linux free from [http://itinfo.mit.edu/product.php?id=7&level=all MIT]
 
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**Backups are stored on one of the four TSM backup servers in building W91
 
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**Manual or Scheduled Backup
 
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**Old versions of current files and deleted files are kept for 30 days
 
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**Need a separate account for each computer to be backed up
 
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*[http://www.extremetech.com/article2/0,1697,1943502,00.asp A Tale of Two Terabyte NAS Boxes]
 
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*[http://buffalotech.com/buffalo-home.php Buffalo Technology]
 
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*[http://www.buffalotech.co.uk/products/category-detail.php?categoryid=29 Buffalo TeraStation Home]
 
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**Example disk configuration: 4 x 250GB IDE (750GB in RAID5)
 
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**Protocols: FTP, SMB
 
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**USB 2.0 port for external hard drive (backup or additional storage)
 
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**[http://www.pcmag.com/article2/0,1759,1780692,00.asp Review by PC Magazine]
 
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***Bottom line: Flexible and reliable storage for everyone on your network. Print sharing is a plus, as is expandable USB disk storage.
 
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***Pros: Offers RAID level data protection; easy-to-configure shared and private storage for all workgroup members; print sharing is a plus.
 
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***Cons: Large footprint. No logging or reporting features.
 
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**[http://www.extremetech.com/article2/0,1697,1917912,00.asp Review by ExtremeTech]
 
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**[http://www.terastation.org/ TeraStation wiki]
 
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*[http://www.buffalotech.co.uk/products/category-detail.php?categoryid=19 Buffalo TeraStation Pro]
 
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**Released in March 2006
 
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**S-ATA drives
 
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*[http://www.infrant.com/products/products.php Infrant ReadyNAS]
 
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*[http://www.infrant.com/products/products_details.php?name=ReadyNAS%20NV ReadyNAS NV]
 
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*[http://www.infrant.com/products/products_details.php?name=ReadyNAS%20NVPlus ReadyNAS NV+]
 
==Notes==
==Notes==

Revision as of 13:39, 18 January 2007

Graduate student in Bioinformatics at Northeastern University working in Endy Lab at MIT.

Contact: ilyas@mit.edu

Contents

Research

Current

Semantic Web Ontology for the Registry of Standard Biological Parts.

Previous

Mating pheromone response pathway analysis across yeast and related species

Activities

OpenWetWare

Notes

Software development

BioBricks aligner - aligns sequence reads (fragments) to Biobrick sequence

Lab computing

WIN.MIT.EDU

Notes

Synthetic Biology

Software

  • Biotool2Web: Creating Simple Web Interfaces for Bioinformatics Applications
  • Sedna is an open source XML-native database management system developed from scratch in C/C++ and Scheme
  • Aggregate Data utilizes AJAX-based "sliders" so survey takers can choose anywhere along a spectrum of opinion
  • CHM file viewers for non-Windows platforms
  • Tor: an anonymous Internet communication system
  • Wireshark: network protocol analyzer (successor to Ethereal)
  • Swivel: YouTube for data - visualize and share your data with others

Application servers

  • Whitebeam - open source; applications are written as a set of XML pages that contain embedded JavaScript

Miscellaneous

Locations of visitors to this page

Personal tools