User:Hussein Alasadi/Notebook/stephens/2013/10/16: Difference between revisions
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==Simulating evolution and then pooled sequencing== | ==Simulating evolution and then pooled sequencing== | ||
* '''We start with a population of N individuals with a certain SNP distribution <math> P(M) | * '''We start with a population of N individuals with a certain SNP distribution <math> P(M)</math> ~ <math> N(\mu, \Sigma) </math>.''' | ||
To do this we can use Dick Hudson's MS to lay down neutral variants (but the distribution really does not matter). | To do this we can use Dick Hudson's MS to lay down neutral variants (but the distribution really does not matter). | ||
Revision as of 21:19, 16 October 2013
 Analyzing pooled sequenced data with selection
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Simulating evolution and then pooled sequencing
To do this we can use Dick Hudson's MS to lay down neutral variants (but the distribution really does not matter).
To do this we can use Kessner's Forqs. Forqs allows the user to specify the recombination rate file. Which might be useful in the future.
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