User:Eamon B. O'Dea: Difference between revisions
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*[[Special:Emailuser/Eamon B. O'Dea|Email me through OpenWetWare]] | *[[Special:Emailuser/Eamon B. O'Dea|Email me through OpenWetWare]] | ||
*[http://www. | *[http://www.georgetown.edu Georgetown University] | ||
*[http:// | *[http://biology.georgetown.edu/ Department of Biology] | ||
* | *Washington, DC 20057 | ||
* OpenPGP key fingerprint: 93B8 FBFA 3C2C 9038 B6E9 24D7 D4C6 B841 F4AE EAD5 | |||
==Labs== | ==Postdoc Lab== | ||
*[http://bansallab.com/ Bansal] | |||
==PhD Labs== | |||
*[http://www.bio.utexas.edu/research/meyers/ Meyers] | *[http://www.bio.utexas.edu/research/meyers/ Meyers] | ||
*[[Wilke:Lab-Home|Wilke]] | *[[Wilke:Lab-Home|Wilke]] | ||
==Education== | ==Education== | ||
<!--Include info about your educational background--> | <!--Include info about your educational background--> | ||
* | * 2013, PhD, [http://www.biosci.utexas.edu/graduate/eeb UT Austin, EEB] | ||
* 2008, BS, [http://www.geneseo.edu/CMS/display.php?dpt=biology SUNY Geneseo, Biology] | * 2008, BS, [http://www.geneseo.edu/CMS/display.php?dpt=biology SUNY Geneseo, Biology] | ||
==Research== | ==Research== | ||
=== | |||
* Infectious | ===Models and methods=== | ||
* | * Parameter estimation for stochastic epidemic models | ||
* Parameter estimation for dynamic contact networks | |||
* Phylodynamics: methods for jointly analyzing phylogentic data of pathogens with data about population dynamics | |||
* Degree correlations in complex networks | |||
* Mutational robustness | |||
===Areas of application=== | |||
* Infectious diseases of livestock | |||
* Norovirus epidemiology | |||
* HIV epidemiology | |||
* Lethal mutagenesis | |||
=== Papers === | === Papers === | ||
* E. B. O'Dea, K. M. Pepin, B. A. Lopman, and C. O. Wilke. Fitting outbreak models to data from many small norovirus outbreaks. Epidemics. [http://dx.doi.org/10.1016/j.epidem.2013.12.002 doi:10.1016/j.epidem.2013.12.002] | |||
* E. B. O'Dea and C. O. Wilke (2011). Contact heterogeneity and phylodynamics: How contact networks shape parasite evolutionary trees. Interdiscip. Persp. Inf. Dis. 2011:238743. [http://dx.doi.org/10.1155/2011/238743 doi:10.1155/2011/238743] | * E. B. O'Dea and C. O. Wilke (2011). Contact heterogeneity and phylodynamics: How contact networks shape parasite evolutionary trees. Interdiscip. Persp. Inf. Dis. 2011:238743. [http://dx.doi.org/10.1155/2011/238743 doi:10.1155/2011/238743] | ||
* E. B. O'Dea, T. E. Keller, and C. O. Wilke (2010). Does mutational robustness inhibit extinction by lethal mutagenesis in viral populations? PLoS Comp. Biol. | * E. B. O'Dea, T. E. Keller, and C. O. Wilke (2010). Does mutational robustness inhibit extinction by lethal mutagenesis in viral populations? PLoS Comp. Biol. | ||
| Line 35: | Line 49: | ||
=== Posters === | === Posters === | ||
* E. B. O'Dea. Epidemic dynamics on randomized scale-free networks. The Joint Mathematics Meeting of the MAA and AMS, January 2008, San Diego. | * E. B. O'Dea and S. Bansal. Learning patterns of transmission from the U.S. PEDV outbreak. Epidemics, November 2013, Amsterdam. | ||
* E. B. O'Dea and C. Leary. Epidemic dynamics on randomized scale-free networks. The Joint Mathematics Meeting of the MAA and AMS, January 2008, San Diego. | |||
=== Code === | === Code === | ||
* [[Media:Ebodea-multi-outbreaks-2013-10-01T18-04-11-0400.zip| Code used in my manuscript on fitting outbreak models to data from multiple outbreaks]] | * [[Media:Ebodea-multi-outbreaks-code-2013-10-01T18-04-11-0400.zip| Code used in my manuscript on fitting outbreak models to data from multiple outbreaks]] | ||
Revision as of 16:31, 30 June 2014
Contact Info
- Georgetown University
- Department of Biology
- Washington, DC 20057
- OpenPGP key fingerprint: 93B8 FBFA 3C2C 9038 B6E9 24D7 D4C6 B841 F4AE EAD5
Postdoc Lab
PhD Labs
Education
- 2013, PhD, UT Austin, EEB
- 2008, BS, SUNY Geneseo, Biology
Research
Models and methods
- Parameter estimation for stochastic epidemic models
- Parameter estimation for dynamic contact networks
- Phylodynamics: methods for jointly analyzing phylogentic data of pathogens with data about population dynamics
- Degree correlations in complex networks
- Mutational robustness
Areas of application
- Infectious diseases of livestock
- Norovirus epidemiology
- HIV epidemiology
- Lethal mutagenesis
Papers
- E. B. O'Dea, K. M. Pepin, B. A. Lopman, and C. O. Wilke. Fitting outbreak models to data from many small norovirus outbreaks. Epidemics. doi:10.1016/j.epidem.2013.12.002
- E. B. O'Dea and C. O. Wilke (2011). Contact heterogeneity and phylodynamics: How contact networks shape parasite evolutionary trees. Interdiscip. Persp. Inf. Dis. 2011:238743. doi:10.1155/2011/238743
- E. B. O'Dea, T. E. Keller, and C. O. Wilke (2010). Does mutational robustness inhibit extinction by lethal mutagenesis in viral populations? PLoS Comp. Biol.
6:e1000811. doi:10.1371/journal.pcbi.1000811
Presentations
- E. B. O'Dea. Degree-correlated scale-free networks and epidemics. Undergraduate Biomathematics Day, April 2008, Niagara Falls, NY.
Posters
- E. B. O'Dea and S. Bansal. Learning patterns of transmission from the U.S. PEDV outbreak. Epidemics, November 2013, Amsterdam.
- E. B. O'Dea and C. Leary. Epidemic dynamics on randomized scale-free networks. The Joint Mathematics Meeting of the MAA and AMS, January 2008, San Diego.
