User:Eamon B. O'Dea: Difference between revisions

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__NOTOC__
 
==Contact Info==
==Contact Info==
[[Image:OWWEmblem.png|thumb|right|Eamon B. O'Dea (an artistic interpretation)]]
[[Image:EamonBODea_mug.jpg|thumb|right|alt=mugshot|Eamon B. O'Dea ]]


*Eamon B. O'Dea
*University of Texas at Austin
*Address 1
*Address 2
*City, State, Country etc.
*[[Special:Emailuser/Eamon B. O'Dea|Email me through OpenWetWare]]
*[[Special:Emailuser/Eamon B. O'Dea|Email me through OpenWetWare]]


I work in the [[Your Lab]] at XYZ University.  I learned about [[OpenWetWare]] from saw website referenced in publication, advisor decided to move web page there, and I've joined because to have a long term place for my scientific career webpage, my lab webpage is moving to openwetware and it would be good if I could maintain parts of it.
*[http://www.georgetown.edu Georgetown University]
*[http://biology.georgetown.edu/ Department of Biology]
*Washington, DC 20057
* OpenPGP key fingerprint:  93B8 FBFA 3C2C 9038 B6E9  24D7 D4C6 B841 F4AE EAD5
 
==Postdoc Lab==
*[http://bansallab.com/ Bansal]
 
==PhD Labs==
*[http://www.bio.utexas.edu/research/meyers/ Meyers]
*[[Wilke:Lab-Home|Wilke]]


==Education==
==Education==
<!--Include info about your educational background-->
<!--Include info about your educational background-->
* Year, PhD, Institute
* 2013, PhD, [http://www.biosci.utexas.edu/graduate/eeb  UT Austin, EEB]
* Year, MS, Institute
* 2008, BS, [http://www.geneseo.edu/CMS/display.php?dpt=biology SUNY Geneseo, Biology]
* Year, BS, Institute
 
==Research==
 
 
 
===Models and methods===
* Parameter estimation for stochastic epidemic models
* Parameter estimation for dynamic contact networks
* Phylodynamics: methods for jointly analyzing phylogentic data of pathogens with data about population dynamics
* Degree correlations in complex networks
* Mutational robustness
 
===Areas of application===
* Infectious diseases of livestock
* Norovirus epidemiology
* HIV epidemiology
* Lethal mutagenesis
 
=== Papers ===
* E. B. O'Dea, K. M. Pepin, B. A. Lopman, and C. O. Wilke. Fitting outbreak models to data from many small norovirus outbreaks. Epidemics. [http://dx.doi.org/10.1016/j.epidem.2013.12.002 doi:10.1016/j.epidem.2013.12.002]
* E. B. O'Dea and C. O. Wilke (2011). Contact heterogeneity and phylodynamics: How contact networks shape parasite evolutionary trees. Interdiscip. Persp. Inf. Dis. 2011:238743. [http://dx.doi.org/10.1155/2011/238743 doi:10.1155/2011/238743]
* E. B. O'Dea, T. E. Keller, and C. O. Wilke (2010). Does mutational robustness inhibit extinction by lethal mutagenesis in viral populations? PLoS Comp. Biol.
6:e1000811. [http://dx.doi.org/10.1371/journal.pcbi.1000811 doi:10.1371/journal.pcbi.1000811]
 
=== Presentations ===
* E. B. O'Dea. Degree-correlated scale-free networks and epidemics. Undergraduate Biomathematics Day, April 2008, Niagara Falls, NY.


==Research interests==
=== Posters ===
<!-- Feel free to add brief descriptions to your research interests as well -->
* E. B. O'Dea and S. Bansal. Learning patterns of transmission from the U.S. PEDV outbreak. Epidemics, November 2013, Amsterdam. 
# Interest 1
* E. B. O'Dea and C. Leary. Epidemic dynamics on randomized scale-free networks. The Joint Mathematics Meeting of the MAA and AMS, January 2008, San Diego.
# Interest 2
# Interest 3


==Publications==
=== Code ===
<!-- Replace the PubMed ID's ("pmid=#######") below with the PubMed ID's for your publications.  You can add or remove lines as needed -->
<biblio>
#Paper1 pmid=6947258
#Paper2 pmid=13718526
// leave a comment about a paper here
#Book1 isbn=0879697164
</biblio>


==Useful links==
* [[Media:Ebodea-multi-outbreaks-code-2013-10-01T18-04-11-0400.zip| Code used in my manuscript on fitting outbreak models to data from multiple outbreaks]]
*[[OpenWetWare:Welcome|Introductory tutorial]]
*[[Help|OpenWetWare help pages]]

Revision as of 16:31, 30 June 2014

Contact Info

mugshot
Eamon B. O'Dea

Postdoc Lab

PhD Labs

Education

Research

Models and methods

  • Parameter estimation for stochastic epidemic models
  • Parameter estimation for dynamic contact networks
  • Phylodynamics: methods for jointly analyzing phylogentic data of pathogens with data about population dynamics
  • Degree correlations in complex networks
  • Mutational robustness

Areas of application

  • Infectious diseases of livestock
  • Norovirus epidemiology
  • HIV epidemiology
  • Lethal mutagenesis

Papers

  • E. B. O'Dea, K. M. Pepin, B. A. Lopman, and C. O. Wilke. Fitting outbreak models to data from many small norovirus outbreaks. Epidemics. doi:10.1016/j.epidem.2013.12.002
  • E. B. O'Dea and C. O. Wilke (2011). Contact heterogeneity and phylodynamics: How contact networks shape parasite evolutionary trees. Interdiscip. Persp. Inf. Dis. 2011:238743. doi:10.1155/2011/238743
  • E. B. O'Dea, T. E. Keller, and C. O. Wilke (2010). Does mutational robustness inhibit extinction by lethal mutagenesis in viral populations? PLoS Comp. Biol.

6:e1000811. doi:10.1371/journal.pcbi.1000811

Presentations

  • E. B. O'Dea. Degree-correlated scale-free networks and epidemics. Undergraduate Biomathematics Day, April 2008, Niagara Falls, NY.

Posters

  • E. B. O'Dea and S. Bansal. Learning patterns of transmission from the U.S. PEDV outbreak. Epidemics, November 2013, Amsterdam.
  • E. B. O'Dea and C. Leary. Epidemic dynamics on randomized scale-free networks. The Joint Mathematics Meeting of the MAA and AMS, January 2008, San Diego.

Code

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