User:Eamon B. O'Dea: Difference between revisions

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__NOTOC__
==Contact Info==
==Contact Info==
[[Image:OWWEmblem.png|thumb|right|Eamon B. O'Dea (an artistic interpretation)]]
[[Image:EamonBODea_mug.jpg|thumb|right|alt=mugshot|Eamon B. O'Dea ]]


*Eamon B. O'Dea
*[[Special:Emailuser/Eamon B. O'Dea|Email me through OpenWetWare]]
*[[Special:Emailuser/Eamon B. O'Dea|Email me through OpenWetWare]]


*[http://www.utexas.edu University of Texas at Austin]
*[http://www.georgetown.edu Georgetown University]
*[http://www.biosci.utexas.edu/ib Section of Integrative Biology]
*[http://biology.georgetown.edu/ Department of Biology]
*Austin, TX 78712
*Washington, DC 20057


==Labs==
==Postdoc Lab==
*[http://bansallab.com/ Bansal]
 
==PhD Labs==
*[http://www.bio.utexas.edu/research/meyers/ Meyers]
*[http://www.bio.utexas.edu/research/meyers/ Meyers]
*[[Wilke:Lab-Home|Wilke]]
*[[Wilke:Lab-Home|Wilke]]


==Education==
==Education==
<!--Include info about your educational background-->
<!--Include info about your educational background-->
* In progress, Phd, UT Austin's [http://www.biosci.utexas.edu/graduate/eeb  EEB Program]  
* 2013, PhD, [http://www.biosci.utexas.edu/graduate/eeb  UT Austin, EEB]  
* 2008, BS, SUNY Geneseo
* 2008, BS, [http://www.geneseo.edu/CMS/display.php?dpt=biology SUNY Geneseo, Biology]
 
==Research==
 
 
 
===Models and methods===
* Parameter estimation for stochastic epidemic models
* Parameter estimation for dynamic contact networks
* Phylodynamics: methods for jointly analyzing phylogentic data of pathogens with data about population dynamics
* Degree correlations in complex networks
* Mutational robustness
 
===Areas of application===
* Infectious diseases of livestock
* Norovirus epidemiology
* HIV epidemiology
* Lethal mutagenesis
 
=== Papers ===
* E. B. O'Dea, K. M. Pepin, B. A. Lopman, and C. O. Wilke. Fitting outbreak models to data from many small norovirus outbreaks. Epidemics. [http://dx.doi.org/10.1016/j.epidem.2013.12.002 doi:10.1016/j.epidem.2013.12.002]
* E. B. O'Dea and C. O. Wilke (2011). Contact heterogeneity and phylodynamics: How contact networks shape parasite evolutionary trees. Interdiscip. Persp. Inf. Dis. 2011:238743. [http://dx.doi.org/10.1155/2011/238743 doi:10.1155/2011/238743]
* E. B. O'Dea, T. E. Keller, and C. O. Wilke (2010). Does mutational robustness inhibit extinction by lethal mutagenesis in viral populations? PLoS Comp. Biol.
6:e1000811. [http://dx.doi.org/10.1371/journal.pcbi.1000811 doi:10.1371/journal.pcbi.1000811]
 
=== Presentations ===
* E. B. O'Dea. Degree-correlated scale-free networks and epidemics. Undergraduate Biomathematics Day, April 2008, Niagara Falls, NY.
 
=== Posters ===
* E. B. O'Dea and S. Bansal. Learning patterns of transmission from the U.S. PEDV outbreak. Epidemics, November 2013, Amsterdam. 
* E. B. O'Dea and C. Leary. Epidemic dynamics on randomized scale-free networks. The Joint Mathematics Meeting of the MAA and AMS, January 2008, San Diego.
 
=== Code ===


==Research interests==
* [[Media:Ebodea-multi-outbreaks-code-2013-10-01T18-04-11-0400.zip| Code used in my manuscript on fitting outbreak models to data from multiple outbreaks]]
<!-- Feel free to add brief descriptions to your research interests as well -->
# Infectious disease
# Virus evolution

Revision as of 12:54, 10 January 2014

Contact Info

mugshot
Eamon B. O'Dea

Postdoc Lab

PhD Labs

Education

Research

Models and methods

  • Parameter estimation for stochastic epidemic models
  • Parameter estimation for dynamic contact networks
  • Phylodynamics: methods for jointly analyzing phylogentic data of pathogens with data about population dynamics
  • Degree correlations in complex networks
  • Mutational robustness

Areas of application

  • Infectious diseases of livestock
  • Norovirus epidemiology
  • HIV epidemiology
  • Lethal mutagenesis

Papers

  • E. B. O'Dea, K. M. Pepin, B. A. Lopman, and C. O. Wilke. Fitting outbreak models to data from many small norovirus outbreaks. Epidemics. doi:10.1016/j.epidem.2013.12.002
  • E. B. O'Dea and C. O. Wilke (2011). Contact heterogeneity and phylodynamics: How contact networks shape parasite evolutionary trees. Interdiscip. Persp. Inf. Dis. 2011:238743. doi:10.1155/2011/238743
  • E. B. O'Dea, T. E. Keller, and C. O. Wilke (2010). Does mutational robustness inhibit extinction by lethal mutagenesis in viral populations? PLoS Comp. Biol.

6:e1000811. doi:10.1371/journal.pcbi.1000811

Presentations

  • E. B. O'Dea. Degree-correlated scale-free networks and epidemics. Undergraduate Biomathematics Day, April 2008, Niagara Falls, NY.

Posters

  • E. B. O'Dea and S. Bansal. Learning patterns of transmission from the U.S. PEDV outbreak. Epidemics, November 2013, Amsterdam.
  • E. B. O'Dea and C. Leary. Epidemic dynamics on randomized scale-free networks. The Joint Mathematics Meeting of the MAA and AMS, January 2008, San Diego.

Code

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