User:David K. Barclay/Notebook/Controlling Pancreas Cell Fate Using Transcription Factors/2014/04/12: Difference between revisions

From OpenWetWare
Jump to navigationJump to search
(Autocreate 2014/04/12 Entry for User:David_K._Barclay/Notebook/Controlling_Pancreas_Cell_Fate_Using_Transcription_Factors)
 
No edit summary
Line 6: Line 6:
| colspan="2"|
| colspan="2"|
<!-- ##### DO NOT edit above this line unless you know what you are doing. ##### -->
<!-- ##### DO NOT edit above this line unless you know what you are doing. ##### -->
==Entry title==
==Promoters Bioinformatics==
* Insert content here...
===H3K27me3 markers TSS sites===
{| class="wikitable" style="width: 800px;"
|- valign="top"
| '''H3K27me3 Markers TSS sites'''
{| width=300px
|-
| '''Chromosome''' || '''Gene''' || '''TSS+250''' || '''TSS-250''' || '''Signal'''
|-
| 13 || PDX1 || 28493908 || 28494408 || 85.24
|-
| 6 || GLP1R || 39016307 || 39016807 || 20.72
|-
| 8 || MAFA || 144509980 || 144510480 || 140.76
|-
| 5 || PCSK1 || 95725790 || 95726290 || 1
|-
| 12 || IAPP || 21525552 || 21526052 || 2
|-
| 20 || KCNQ2 || 62031317 || 62031817 || 4
|}


===Table Browser Protocl (UCSC)===
# Go to UCSC Table Browser http://genome.ucsc.edu/cgi-bin/hgTables?hgsid=356574357
# Clade to Mammal, Genome to Human, Assembly to Mar. 2006 (hg18)
#Track to UW Histone
#Region defined as TSS+250 and TSS-250 above
#Output format to "selected fields from primary and related tables." Click get output
#Select: chrom, chromStart, chromEnd, name and signalValue


===Results===
No results found, none of genes found with UW histone markers.
<!-- ##### DO NOT edit below this line unless you know what you are doing. ##### -->
<!-- ##### DO NOT edit below this line unless you know what you are doing. ##### -->
|}
|}


__NOTOC__
__NOTOC__

Revision as of 12:20, 14 April 2014

Cell Fate Switch by Synthetic Transcription Factors <html><img src="/images/9/94/Report.png" border="0" /></html> Main project page
<html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>Previous entry<html>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</html>Next entry<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html>

Promoters Bioinformatics

H3K27me3 markers TSS sites

H3K27me3 Markers TSS sites
Chromosome Gene TSS+250 TSS-250 Signal
13 PDX1 28493908 28494408 85.24
6 GLP1R 39016307 39016807 20.72
8 MAFA 144509980 144510480 140.76
5 PCSK1 95725790 95726290 1
12 IAPP 21525552 21526052 2
20 KCNQ2 62031317 62031817 4

Table Browser Protocl (UCSC)

  1. Go to UCSC Table Browser http://genome.ucsc.edu/cgi-bin/hgTables?hgsid=356574357
  2. Clade to Mammal, Genome to Human, Assembly to Mar. 2006 (hg18)
  3. Track to UW Histone
  4. Region defined as TSS+250 and TSS-250 above
  5. Output format to "selected fields from primary and related tables." Click get output
  6. Select: chrom, chromStart, chromEnd, name and signalValue

Results

No results found, none of genes found with UW histone markers.


Retrieved from "https://openwetware.org/mediawiki/index.php?title=User:David_K._Barclay/Notebook/Controlling_Pancreas_Cell_Fate_Using_Transcription_Factors/2014/04/12&oldid=787554"