User:Catherine Koenigsknecht/Notebook/Experimental Biological Chemistry/2013/02/05: Difference between revisions

From OpenWetWare
Jump to navigationJump to search
(5 intermediate revisions by 2 users not shown)
Line 6: Line 6:
| colspan="2"|
| colspan="2"|
<!-- ##### DO NOT edit above this line unless you know what you are doing. ##### -->
<!-- ##### DO NOT edit above this line unless you know what you are doing. ##### -->
==Entry title==
Analysis of Docking Screen for ADA


==Objective==
#View docking score results
#Compare docking scores to known flavonoids
#Identify possible alternatives to known flavonoids using docking scores
#Locate chosen alternative compounds and purchase for additional testing


==Description==
*View docking scores of screened compounds:
#Open Maestro
#Project->import structures: open grid_grid_SP_1500Flavanoids.pv
#Project Table: View docking scores (more negative docking score = better docking


*Identify top score compound structures: (using project table)
**Look at H bonds and fit of structure
**Look at compounds with flavonoid similarity
***sort by fpscreen_1 on table (larger the score the closer to flavanoid)
****identify flavonoid structures by viewing compounds
*Input ID numbers into Zinc database:
#View Vendors and avaliability
*Choose COmpounds to Order and test:
==Notes==
Docking Scores for the flavanoids:
Myricetin: -6.237
Kaempferol: -6.067
Quercetin: -5.905




Revision as of 14:48, 8 May 2013

Biomaterials Design Lab <html><img src="/images/9/94/Report.png" border="0" /></html> Main project page
<html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>Previous entry<html>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</html>Next entry<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html>




Use categories like tags. Change the "Course" category to the one corresponding to your course. The "Miscellaneous" tag can be used for particular experiments, as instructed by your professor. Please be sure to change or delete this tag as required so that the categories remain well organized.



Retrieved from "https://openwetware.org/mediawiki/index.php?title=User:Catherine_Koenigsknecht/Notebook/Experimental_Biological_Chemistry/2013/02/05&oldid=697213"