User:Carl Boettiger/Notebook/Comparative Phylogenetics/2010/04/23

From OpenWetWare
Jump to navigationJump to search
Comparative Phylogenetics <html><img src="/images/9/94/Report.png" border="0" /></html> Main project page
<html><img src="/images/c/c3/Resultset_previous.png" border="0" /></html>Previous entry<html>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;</html>Next entry<html><img src="/images/5/5c/Resultset_next.png" border="0" /></html>

Adaptive Dynamics

Computing Challenges

  • 10 - 1p Adding solutions to yesterday's puzzles, see Yesterday's Entry
  • The random number generator solution is imperfect, as it limits the total number of seeds to 1e9 since coercing to an integer will create NAs with larger numbers.


 seeds <- 1e9*runif(reps)
 out <- sfSapply(1:reps, function(i){ branch_simulation(seed=seeds[i]) })

Analytic Solutions

Git Log

<syntax> Created commit da58a6e: random number seeds now set to avoid parallel cores running with same seed 

2 files changed, 19 insertions(+), 9 deletions(-)

cboettig@wiglaf:~/Documents/ucdavis/research/adaptiveDynamics/code/branchingtime$ git log commit da58a6eb079a8ff9c2c28a2e5e1c27fe484f43fc Author: Carl Boettiger <cboettig@gmail.com> Date: Fri Apr 23 13:05:30 2010 -0700 

   random number seeds now set to avoid parallel cores running with same seed

commit 6e5363559f602d1dd2e2f8addec0716e8a5c842a Author: Carl Boettiger <cboettig@gmail.com> Date: Fri Apr 23 11:46:42 2010 -0700 

   solution for exporting .C call to parallel cores


</syntax>

Other Work

  • Completed review for Theoretical Ecology.
  • Still finishing review for JTB
  • PDG group reading Nee et. al. (2006)


Retrieved from "https://openwetware.org/mediawiki/index.php?title=User:Carl_Boettiger/Notebook/Comparative_Phylogenetics/2010/04/23&oldid=416874"