User:Bgnatowski

Modulated Biosystems, L.C.C.

Modeling Languages & Tools

1. CellML - The CellML language is an open standard based on the XML markup language. CellML is being developed by the Bioengineering Institute at the University of Auckland and affiliated research groups.

The purpose of CellML is to store and exchange computer-based mathematical models. CellML allows scientists to share models even if they are using different model-building software. It also enables them to reuse components from one model in another, thus accelerating model building. http://www.cellml.org/

2. Systems Biology Markup Language- The Systems Biology Markup Language (SBML) is a computer-readable format for representing models of biochemical reaction networks. SBML is applicable to metabolic networks, cell-signaling pathways, regulatory networks, and many others. http://sbml.org/index.psp

3. BiologicalNetworks - a free Integrated Research Environment (IRE) for biologists maintained by the UCSD and the Keck Graduate Institute. http://biologicalnetworks.net/index.php

4. BioModels.net - The BioModels.net project is an international effort to (1) define agreed-upon standards for model curation, (2) define agreed-upon vocabularies for annotating models with connections to biological data resources, and (3) provide a free, centralized, publicly-accessible database of annotated, computational models in SBML and other structured formats. http://www.biomodels.net/

Systems Biology Research

1. The Institute for Systems Biology http://www.systemsbiology.org/

2. The Keck Graduate Institute Systems Biology and Computational Biology http://www.kgi.edu/x7178.xml