User:Abhishek Kumar

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Abhishek Kumar (an artistic interpretation)
  • Dr. Abhishek Kumar
  • Abteilung für Botanische Genetik und Molekularbiologie
  • Botanisches Institut und Botanischer Garten
  • Christian-Albrechts-Universität zu Kiel
  • Kiel, SH, Germany.
  • Email me through OpenWetWare

I work in the AG Kempken at University of Kiel (Christian-Albrechts-Universität zu Kiel) at Kiel, Germany. I learned about OpenWetWare from on web search!!!, and I've joined because Sharing information.

Profile

  • Research Associate in Next generation genome and transcriptome sequencing University of Kiel, Kiel, Germany (webpage: www.uni-kiel.de)
  • Postdoc in insect transcriptome sequencing University of Padova, Padova, Italy (webpage: www.unipd.it)
  • PhD in Bioinformatics University of Bielefeld, Bielefeld, Germany (webpage: www.uni-bielefeld.de)
  • MS, School of Biotechnology, Madurai Kamaraj University, Madurai, India (webpage: www.biotechmku.org)
  • BS, Ewing Christian College, Allahabad University, Allahabad, India (webpage: http://www.ecc.ac.in/)

Research interests

  1. Bioactive compounds from fungi
  2. Next generation sequencing (NGS)
  3. Application of NGS
  4. Molecualr evolution of superfamilies of proteins
  5. Evolution of introns
  6. Gene/Genome Duplications

Publications

  1. Kumar, A*., Sarde, S. J., & Bhandari, A. (2014). Revising angiotensinogen from phylogenetic and genetic variants perspectives. BBRC, 446 (2014) 504–518. doi:10.1016/j.bbrc.2014.02.139.
  2. Kumar, A. …. Grapputo, A. (2014) Sequencing, de novo annotation and transcriptome analysis of the Colorado potato beetle, Leptinotarsa decemlineata. PloS ONE 9(1): e86012.doi:10.1371/journal.pone.0086012.
  3. Kumar, A*., Bhandari, A., Sarde, S. J., & Goswami, C. (2013). Sequence, phylogenetic and variant analyses of antithrombin III. BBRC, 440(4), 714–724. doi:10.1016/j.bbrc.2013.09.134
  4. Kumar, A., Kollath-Leiß, K., & Kempken, F. (2013). Characterization of bud emergence 46 (BEM46) protein: sequence, structural, phylogenetic and subcellular localization analyses. BBRC, 438(3), 526–532. doi:10.1016/j.bbrc.2013.07.103
  5. Traeger, S., Altegoer, F., Freitag, M., Gabaldon, T., Kempken, F., Kumar, A., … Nowrousian, M. (2013). The Genome and Development-Dependent Transcriptomes of Pyronema confluens: A Window into Fungal Evolution. PLoS Genetics, 9(9), e1003820.
  6. Majhi, R. K., ….Kumar, A., Goswami, C. (2013). Thermosensitive ion channel TRPV1 is endogenously expressed in the sperm of a fresh water teleost fish (Labeo rohita) and regulates sperm motility. Channels (Austin, Tex.), 7(6), 1–10.
  7. Vidotto, M., Grapputo, A., Boscari, E., … Kumar, A., Congiu, L. (2013). Transcriptome sequencing and de novo annotation of the critically endangered Adriatic sturgeon. BMC genomics, 14(1), 407. doi:10.1186/1471-2164-14-407 Highly accessed.
  8. Gruettner S., Hopf, C., Kumar, A., & Kempken, F. (2013). Deletions in cox2 mRNA result in loss of splicing and RNA editing and gain of novel RNA editing sites. PLoS ONE, 8(12): e82067. doi:10.1371/journal.pone.0082067.
  9. Kumar A*, Bhandari A, Sinha R, Sardar P, Sushma M, et al. (2012) Molecular Phylogeny of OVOL Genes Illustrates a Conserved C2H2 Zinc Finger Domain Coupled by Hypervariable Unstructured Regions. PLoS ONE 7(6): e39399. doi:10.1371/journal.pone.0039399.
  10. Sardar P., Kumar A., Bhandari A., Goswami C. (2012) Conservation of Tubulin-Binding Sequences in TRPV1 throughout Evolution. PLoS ONE 7(4): e31448. doi:10.1371/journal.pone.0031448
  11. Kumar, A.* Bhandari, A. Sinha, R. Goyal, P. Grapputo, A. (2011) Spliceosomal Intron Insertions in Genome Compacted Ray-Finned Fishes as Evident from Phylogeny of MC Receptors, Also Supported by a Few Other GPCRs. PLoS ONE 6(8): e22046.
  12. Goyal, P. Behring, A. Kumar, A. Siess, W. (2011) STK35L1 Associates with Nuclear Actin and Regulates Cell Cycle and Migration of Endothelial Cells. PLoS ONE 6(1): e16249.
  13. Ragg, H. Kumar, A. ………..(2009). Multiple gains of spliceosomal introns in a superfamily of vertebrate protease inhibitor genes. BMC Evolutionary Biology,9:208.
  14. Goyal, P. Behring, A. Kumar, A. Siess, W. (2009). Characterization of a novel protein kinase STK35L1 and deciphering its orthologs and close-homologs in vertebrates. PLoS ONE 4(9): e6981.
  15. Kumar, A. & Ragg, H. (2008). Ancestry and evolution of a secretory pathway serpin. BMC Evolutionary Biology, 8:250. Highly accessed.
  16. Kumar, A. & Krishnaswamy, S (2008). Temperature factor analysis of outer membrane beta-stranded porin crystal structures suggests the pore is not uniformly rigid. Available from Nature Precedings <http://hdl.handle.net/10101/npre.2008.2495.1>
  17. Kumar, A*. (2005). Delving into vertebrate serpins for understanding their evolution, BREW 2005, Berlin. Nature Precedings <http://dx.doi.org/10.1038/npre.2009.3050.1> (2009).
  18. Tripathi, S. Sonkar, S.K. Kumar, A. Khan, M.Y. & Sarkar, S. (2009). Water soluble carbon nanotubes affect growth of the common gram (Cicer arietinum). Nature Precedings <http://hdl.handle.net/10101/npre.2009.4056.1>.

Conference Talks

Conference Posters

  1. Kumar, A. Labes A. and Kempken, F. (2013) NGS genome and transcriptome based methods for the exploration of secondary metabolites from marine fungi for the treatment of cancer. ELRIG - Research and Innovation Impact into Cancer, 11th March 2014, Telford, UK.
  2. Kumar, A. Labes A. and Kempken, F. (2013) Genome sequencing, assembly and annotation of a marine isolate of Scopulariopsis brevicaulis using three different next generation sequencing technologies. 11th March 2014, Telford, UK.
  3. Kumar, A. and Kempken, F. (2013) Next-generation genome and transcriptome based methods for the exploration of secondary metabolites from marine fungi for the treatment of cancer. International Conference of Fungal Biology, 29.09.-02.10.2013, Karlsruhe, Germany.
  4. Kumar, A. and Kempken, F. (2013) Genome sequencing, assembly and annotation of three marine fungal isolates using different next generation DNA sequencing methods for pharmaceutically important secondary metabolites. 27. Fungal Genetics Conference, 12.-17.03.2013, Pacific Grove, California, USA.
  5. Kumar, A., Kollath-Leiß, K., & Kempken, F. (2013). Structural, functional and molecular evolution of eukaryotic BEM46, 3DSIG, ISMB/ECCB, July 2013, Berlin, Germany.
  6. Kumar, A. and Kempken, F. (2013) Genome sequencing, assembly and annotation of a marine fungal isolate of Scopulariopsis brevicaulis using three different next generation sequencing technologies. 27. Fungal Genetics Conference, 12.-17.03.2013, Pacific Grove, California, USA.
  7. Shbat Y, Kumar, A. and Kempken, F. (2013) Comparative analysis of fungal kinomes. 27. Fungal Genetics Conference, 12.-17.03.2013, Pacific Grove, California, USA.
  8. Kumar, A. Kollath-Leiss, K. and Kempken, F. (2013) Known unknown genes: evolution of eukaryotic BEM46, 27. Fungal Genetics Conference, 12.-17.03.2013, Pacific Grove, California, USA.
  9. Kumar, A.and Kempken, F. (2013) Genome sequencing, assembly and annotation of a marine fungal isolate of Calcarisporium using different next generation sequencing technologies. 27. Fungal Genetics Conference, 12.-17.03.2013, Pacific Grove, California, USA.
  10. Kumar, A.and Kempken, F. (2013) Genome sequencing, assembly and annotation of a marine fungal isolate of Pestalotiopsis using next generation sequencing technologies. 27. Fungal Genetics Conference, 12.-17.03.2013, Pacific Grove, California, USA.
  11. Kumar, A.and Kempken, F. (2012) Genome sequence analysis of three marine fungal isolates using different next generation DNA sequencing methods, German conference on Bioinformatics (GCB) 2012, Jena, Germany, pp.38
  12. Kumar, A.Kollath-Leiss, K. and Kempken, F. (2012) Sequence, structure, function and evolution of BEM46 proteins, German conference on Bioinformatics (GCB) 2012, Jena, Germany pp.40
  13. Shbat, Y., #Kumar, A. and Kempken, F. (2012) Establishment and analysis of fungal kinomes, German conference on Bioinformatics (GCB) 2012, Jena, Germany pp.42
  14. Kumar, A.and Grapputo, A. (2012) Transcriptomic analysis of the adult life stage of the invasive Colorado potato beetle (Leptinotarsa decemlineata) using Roche 454, German conference on Bioinformatics (GCB) 2012, Jena, Germany pp.71
  15. Vidotto, M., Coppe, A., Kumar, A. Grapputo, A., Grandi, G. & Congiu, L. (2012) Trancriptomic analysis of the polyplod adriatic sturgeon, Acipenser nacarii, German conference on Bioinformatics (GCB) 2012, Jena, Germany, pp.125
  16. Kumar, A. and Kempken, F. (2012) Next-generation genome sequencing, assembly, annotation and analysis of a marine isolate of Scopulariopsis brevicaulis, VAAM Conference, Tuebingen, Germany, pp. 79
  17. Kumar, A. and Kempken, F. (2012) The draft genome of marine isolate of Scopulariopsis brevicaulis using three different next generation sequencing methods Blue Biotech Event, Kiel, Germany, pp. 21
  18. Kumar, A. & Kempken, F. (2012) The draft genome of marine isolate of Scopulariopsis brevicaulis using three different next generation sequencing methods. SUBMARINER Blue Biotechnology Cooperation Event: New Strategies and Future Perspectives, Kiel, Germany.
  19. Kumar, A. & Kempken, F. (2012) Genome sequence analysis of three marine fungal isolates using different next generation DNA sequencing methods [GCB2012 Conference, 21.09.2012, Jena, Germany.
  20. Kumar, A. Kollath-Leiss, K. & Kempken, F. (2011) Molecular Phylogeny of bud emergence 46 (BEM46). VAAM Symposium - Molecular biology of fungi, Sept 2011, Marburg, Germany.
  21. Grapputo, A. & Kumar, A. (2011) Transcriptomic analysis of the invasive Colorado potato beetle (Leptinotarsa decemlineata). Evolution2011, June 2011 ~ Norman, Oklahoma, USA
  22. Kumar, A. & Ragg, H. (2008). Deciphering the phylogenetic history of neuroserpin orthologs across metazoans by analysis of synteny and rare genomic characters. German Conference on Bioinformatics (GCB2008), Dresden, Germany. Nature Precedings <http://dx.doi.org/10.1038/npre.2008.2496.1>.
  23. Kumar, A. Behring, A. Siess, W. Goyal, P. (2008). Serine threonine kinases STK35 homologs: characterization of a novel protein sub-family and orthology assignment across vertebrates using computational genomics. German Conference on Bioinformatics (GCB2008), Dresden, Germany.
  24. Kumar, A. & Ragg, H. (2008). Unraveling the phylogenetic history of neuroserpin orthologs across metazoans by analysis of synteny and rare genomic characters. International Symposium on Microbial Biotechnology: Diversity, Genomics and Metagenomics, New Delhi, India.
  25. Kumar, A. & Krishnaswamy, S. (2003). Structural analysis of outer membrane beta stranded porins using B-factor. 2nd International Conference on Structure, Dynamics, and Function of Proteins in Biological Membranes, Ascona, Switzerland. Nature Precedings <http://dx.doi.org/10.1038/npre.2009.2803.1> (2009).
  26. Kumar, A. & Krishnaswamy S. (2001). Structural analysis of outer membrane beta stranded porins using temperature factor. International Symposium on Crystallography and Bioinformatics (CBSB'01), Indian Institute of Science Bangalore. India.
  27. Kumar, A. & Bhat, R.(2001). The Thermal Effects on Biomolecular Systems: Molecular Modeling and Simulational Studies. 5th ADNAT Symposium on genomics perspectives at Centre for Cellular & Molecular Biology (CCMB), Hyderabad, India.

Useful links

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