User:Abhishek Kumar: Difference between revisions

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# Gene/Genome Duplications
# Gene/Genome Duplications


==Publications==
1. Kumar, A*., Sarde, S. J., & Bhandari, A. (2014). Revising angiotensinogen from phylogenetic and genetic variants perspectives. BBRC (In Press).
<!-- Replace the PubMed ID's ("pmid=#######") below with the PubMed ID's for your publications. You can add or remove lines as needed -->
2. Kumar, A. …. Grapputo, A. (2014) Sequencing, de novo annotation and transcriptome analysis of the Colorado potato beetle, Leptinotarsa decemlineata. PloS ONE 9(1): e86012.
<biblio>
doi:10.1371/journal.pone.0086012.
 
3. Kumar, A*., Bhandari, A., Sarde, S. J., & Goswami, C. (2013). Sequence, phylogenetic and variant analyses of antithrombin III. BBRC, 440(4), 714–724. doi:10.1016/j.bbrc.2013.09.134
#Paper1 '''Kumar A'''*, Bhandari A, Sinha R, Sardar P, Sushma M, et al. (2012) Molecular Phylogeny of OVOL Genes Illustrates a Conserved C2H2 Zinc Finger Domain Coupled by Hypervariable Unstructured Regions. PLoS ONE 7(6): e39399. doi:10.1371/journal.pone.0039399 (IF=4.41) pmid=22737237
4. Kumar, A., Kollath-Leiß, K., & Kempken, F. (2013). Characterization of bud emergence 46 (BEM46) protein: sequence, structural, phylogenetic and subcellular localization analyses. BBRC, 438(3), 526–532. doi:10.1016/j.bbrc.2013.07.103
#Paper2 Sardar P, '''Kumar A''', Bhandari A, Goswami C (2012) Conservation of Tubulin-Binding Sequences in TRPV1 throughout Evolution. PLoS ONE 7(4): e31448. doi:10.1371/journal.pone.0031448 (IF=4.41, Citation=1)
5. Traeger, S., Altegoer, F., Freitag, M., Gabaldon, T., Kempken, F., Kumar, A., … Nowrousian, M. (2013). The Genome and Development-Dependent Transcriptomes of Pyronema confluens: A Window into Fungal Evolution. PLoS Genetics, 9(9), e1003820.
#Paper3 '''Kumar A'''*, Bhandari A, Sinha R, Goyal P, Grapputo A (2011) Spliceosomal Intron Insertions in Genome Compacted Ray-Finned Fishes as Evident from Phylogeny of MC Receptors, Also Supported by a Few Other GPCRs. PLoS ONE 6(8): e22046. doi:10.1371/journal.pone.0022046 (IF=4.41, Citation=1) pmid=21850219
6. Majhi, R. K., ….Kumar, A., Goswami, C. (2013). Thermosensitive ion channel TRPV1 is endogenously expressed in the sperm of a fresh water teleost fish (Labeo rohita) and regulates sperm motility. Channels (Austin, Tex.), 7(6), 1–10.
#Paper4 Goyal P, Behring A, '''Kumar A''', Siess W (2011) STK35L1 Associates with Nuclear Actin and Regulates Cell Cycle and Migration of Endothelial Cells. PLoS ONE 6(1): e16249. doi:10.1371/journal.pone.0016249 (IF=4.41,Citation=4)
7. Vidotto, M., Grapputo, A., Boscari, E., … Kumar, A., Congiu, L. (2013). Transcriptome sequencing and de novo annotation of the critically endangered Adriatic sturgeon. BMC genomics, 14(1), 407. doi:10.1186/1471-2164-14-407 Highly accessed.
#Paper5 Goyal P, Behring A, '''Kumar A''', Siess W (2009) Identifying and Characterizing a Novel Protein Kinase STK35L1 and Deciphering Its Orthologs and Close-Homologs in Vertebrates. PLoS ONE 4(9): e6981. doi:10.1371/journal.pone.0006981 (IF=4.41, Citation=2)
8. Gruettner S., Hopf, C., Kumar, A., & Kempken, F. (2013). Deletions in cox2 mRNA result in loss of splicing and RNA editing and gain of novel RNA editing sites. PLoS ONE (in Press)
#Paper6 Ragg, H. '''Kumar, A'''. ………..(2009). Multiple gains of spliceosomal introns in a superfamily of vertebrate
9. Kumar A*, Bhandari A, Sinha R, Sardar P, Sushma M, et al. (2012) Molecular Phylogeny of OVOL Genes Illustrates a Conserved C2H2 Zinc Finger Domain Coupled by Hypervariable Unstructured Regions. PLoS ONE 7(6): e39399. doi:10.1371/journal.pone.0039399.
protease inhibitor genes. BMC Evolutionary Biology,9:208.(IF=4.29, Citation=9)
10. Sardar P, Kumar A, Bhandari A, Goswami C (2012) Conservation of Tubulin-Binding Sequences in TRPV1 throughout Evolution. PLoS ONE 7(4): e31448. doi:10.1371/journal.pone.0031448  
#Paper7 '''Kumar, A'''. & Ragg, H. (2008). Ancestry and evolution of a secretory pathway serpin. BMC Evolutionary
11. Kumar, A.* Bhandari, A. Sinha, R. Goyal, P. Grapputo, A. (2011) Spliceosomal Intron Insertions in Genome Compacted Ray-Finned Fishes as Evident from Phylogeny of MC Receptors, Also Supported by a Few Other GPCRs. PLoS ONE 6(8): e22046.  
Biology, 8:250. Highly accessed.(IF=4.29, Citation=4)
12. Goyal, P. Behring, A. Kumar, A. Siess, W. (2011) STK35L1 Associates with Nuclear Actin and Regulates Cell Cycle and Migration of Endothelial Cells. PLoS ONE 6(1): e16249.  
#Paper8 '''Kumar, A''' & Krishnaswamy, S (2008). Temperature factor analysis of outer membrane beta-stranded porin
13. Ragg, H. Kumar, A. ………..(2009). Multiple gains of spliceosomal introns in a superfamily of vertebrate protease inhibitor genes. BMC Evolutionary Biology,9:208.
crystal structures suggests the pore is not uniformly rigid. Available from Nature Precedings
14. Goyal, P. Behring, A. Kumar, A. Siess, W. (2009). Characterization of a novel protein kinase STK35L1 and deciphering its orthologs and close-homologs in vertebrates. PLoS ONE 4(9): e6981.
<http://hdl.handle.net/10101/npre.2008.2495.1>
15. Kumar, A. & Ragg, H. (2008). Ancestry and evolution of a secretory pathway serpin. BMC Evolutionary Biology, 8:250. Highly accessed.
#Paper9 '''Kumar, A'''*. (2005). Delving into vertebrate serpins for understanding their evolution, BREW 2005, Berlin.
16. Kumar, A & Krishnaswamy, S (2008). Temperature factor analysis of outer membrane beta-stranded porin crystal structures suggests the pore is not uniformly rigid. Available from Nature Precedings  
Nature Precedings <http://dx.doi.org/10.1038/npre.2009.3050.1> (2009) (Citation=1)
<http://hdl.handle.net/10101/npre.2008.2495.1>  
#Paper10
17. Kumar, A*. (2005). Delving into vertebrate serpins for understanding their evolution, BREW 2005, Berlin. Nature Precedings <http://dx.doi.org/10.1038/npre.2009.3050.1> (2009).
Tripathi, S. Sonkar, S.K. '''Kumar, A'''. Khan, M.Y. & Sarkar, S. (2009). Water soluble carbon nanotubes affect
18. Tripathi, S. Sonkar, S.K. Kumar, A. Khan, M.Y. & Sarkar, S. (2009). Water soluble carbon nanotubes affect growth of the common gram (Cicer arietinum). Nature Precedings
growth of the common gram (Cicer arietinum). Nature Precedings
<http://hdl.handle.net/10101/npre.2009.4056.1>.
<http://hdl.handle.net/10101/npre.2009.4056.1>
#Book1 '''Kumar, A'''.* (2010). Bioinformatic Analysis of Beta Barrel Porins. Publisher: VDM Verlag, ISBN: 9783639244502.
Available from Amazon.
 
//* Corresponding Author
</biblio>


==Useful links==
==Useful links==
*[[OpenWetWare:Welcome|Introductory tutorial]]
*[[OpenWetWare:Welcome|Introductory tutorial]]
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*[[Help|OpenWetWare help pages]]

Revision as of 05:03, 24 April 2014

I am a new member of OpenWetWare!

Contact Info

Abhishek Kumar (an artistic interpretation)
  • Dr. Abhishek Kumar
  • Abteilung für Botanische Genetik und Molekularbiologie
  • Botanisches Institut und Botanischer Garten
  • Christian-Albrechts-Universität zu Kiel
  • Kiel, SH, Germany.
  • Email me through OpenWetWare

I work in the AG Kempken at University of Kiel (Christian-Albrechts-Universität zu Kiel) at Kiel, Germany. I learned about OpenWetWare from on web search!!!, and I've joined because Sharing information.

Profile

  • Research Associate in Next generation genome and transcriptome sequencing University of Kiel, Kiel, Germany (webpage: www.uni-kiel.de)
  • Postdoc in insect transcriptome sequencing University of Padova, Padova, Italy (webpage: www.unipd.it)
  • PhD in Bioinformatics University of Bielefeld, Bielefeld, Germany (webpage: www.uni-bielefeld.de)
  • MS, School of Biotechnology, Madurai Kamaraj University, Madurai, India (webpage: www.biotechmku.org)
  • BS, Ewing Christian College, Allahabad University, Allahabad, India (webpage: http://www.ecc.ac.in/)

Research interests

  1. Bioactive compounds from fungi
  2. Next generation sequencing (NGS)
  3. Application of NGS
  4. Molecualr evolution of superfamilies of proteins
  5. Evolution of introns
  6. Gene/Genome Duplications

1. Kumar, A*., Sarde, S. J., & Bhandari, A. (2014). Revising angiotensinogen from phylogenetic and genetic variants perspectives. BBRC (In Press). 2. Kumar, A. …. Grapputo, A. (2014) Sequencing, de novo annotation and transcriptome analysis of the Colorado potato beetle, Leptinotarsa decemlineata. PloS ONE 9(1): e86012. doi:10.1371/journal.pone.0086012. 3. Kumar, A*., Bhandari, A., Sarde, S. J., & Goswami, C. (2013). Sequence, phylogenetic and variant analyses of antithrombin III. BBRC, 440(4), 714–724. doi:10.1016/j.bbrc.2013.09.134 4. Kumar, A., Kollath-Leiß, K., & Kempken, F. (2013). Characterization of bud emergence 46 (BEM46) protein: sequence, structural, phylogenetic and subcellular localization analyses. BBRC, 438(3), 526–532. doi:10.1016/j.bbrc.2013.07.103 5. Traeger, S., Altegoer, F., Freitag, M., Gabaldon, T., Kempken, F., Kumar, A., … Nowrousian, M. (2013). The Genome and Development-Dependent Transcriptomes of Pyronema confluens: A Window into Fungal Evolution. PLoS Genetics, 9(9), e1003820. 6. Majhi, R. K., ….Kumar, A., Goswami, C. (2013). Thermosensitive ion channel TRPV1 is endogenously expressed in the sperm of a fresh water teleost fish (Labeo rohita) and regulates sperm motility. Channels (Austin, Tex.), 7(6), 1–10. 7. Vidotto, M., Grapputo, A., Boscari, E., … Kumar, A., Congiu, L. (2013). Transcriptome sequencing and de novo annotation of the critically endangered Adriatic sturgeon. BMC genomics, 14(1), 407. doi:10.1186/1471-2164-14-407 Highly accessed. 8. Gruettner S., Hopf, C., Kumar, A., & Kempken, F. (2013). Deletions in cox2 mRNA result in loss of splicing and RNA editing and gain of novel RNA editing sites. PLoS ONE (in Press) 9. Kumar A*, Bhandari A, Sinha R, Sardar P, Sushma M, et al. (2012) Molecular Phylogeny of OVOL Genes Illustrates a Conserved C2H2 Zinc Finger Domain Coupled by Hypervariable Unstructured Regions. PLoS ONE 7(6): e39399. doi:10.1371/journal.pone.0039399. 10. Sardar P, Kumar A, Bhandari A, Goswami C (2012) Conservation of Tubulin-Binding Sequences in TRPV1 throughout Evolution. PLoS ONE 7(4): e31448. doi:10.1371/journal.pone.0031448 11. Kumar, A.* Bhandari, A. Sinha, R. Goyal, P. Grapputo, A. (2011) Spliceosomal Intron Insertions in Genome Compacted Ray-Finned Fishes as Evident from Phylogeny of MC Receptors, Also Supported by a Few Other GPCRs. PLoS ONE 6(8): e22046. 12. Goyal, P. Behring, A. Kumar, A. Siess, W. (2011) STK35L1 Associates with Nuclear Actin and Regulates Cell Cycle and Migration of Endothelial Cells. PLoS ONE 6(1): e16249. 13. Ragg, H. Kumar, A. ………..(2009). Multiple gains of spliceosomal introns in a superfamily of vertebrate protease inhibitor genes. BMC Evolutionary Biology,9:208. 14. Goyal, P. Behring, A. Kumar, A. Siess, W. (2009). Characterization of a novel protein kinase STK35L1 and deciphering its orthologs and close-homologs in vertebrates. PLoS ONE 4(9): e6981. 15. Kumar, A. & Ragg, H. (2008). Ancestry and evolution of a secretory pathway serpin. BMC Evolutionary Biology, 8:250. Highly accessed. 16. Kumar, A & Krishnaswamy, S (2008). Temperature factor analysis of outer membrane beta-stranded porin crystal structures suggests the pore is not uniformly rigid. Available from Nature Precedings <http://hdl.handle.net/10101/npre.2008.2495.1> 17. Kumar, A*. (2005). Delving into vertebrate serpins for understanding their evolution, BREW 2005, Berlin. Nature Precedings <http://dx.doi.org/10.1038/npre.2009.3050.1> (2009). 18. Tripathi, S. Sonkar, S.K. Kumar, A. Khan, M.Y. & Sarkar, S. (2009). Water soluble carbon nanotubes affect growth of the common gram (Cicer arietinum). Nature Precedings 

<http://hdl.handle.net/10101/npre.2009.4056.1>.

Useful links

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