UA Biophysics:SysBio Meeting:Journal Watch: Difference between revisions
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==Biophysical Journal== | ==Biophysical Journal== | ||
•[http://www.cell.com/biophysj/abstract/S0006-3495(15)00617-7] | •[http://www.cell.com/biophysj/abstract/S0006-3495(15)00617-7 Isocost Lines Describe the Cellular Economy of Genetic Circuits] | ||
•[http://www.cell.com/biophysj/abstract/S0006-3495(14)01273-9] | •[http://www.cell.com/biophysj/abstract/S0006-3495(14)01273-9 Understanding Gene Expression Heterogeneity in Living Cells with Single-Molecule Fluorescence Microscopy] | ||
•[http://www.cell.com/biophysj/abstract/S0006-3495(13)03394-8] | •[http://www.cell.com/biophysj/abstract/S0006-3495(13)03394-8 Sensitivity Analysis and Model Reduction Applied to Adapting Biological Systems] | ||
•[http://www.cell.com/biophysj/abstract/S0006-3495(13)05603-8] | •[http://www.cell.com/biophysj/abstract/S0006-3495(13)05603-8 Information Transmission through Pancreatic Beta Cell Signaling Pathways] | ||
•[http://www.cell.com/biophysj/abstract/S0006-3495(14)01128-X] | •[http://www.cell.com/biophysj/abstract/S0006-3495(14)01128-X Systems Mechanobiology: Tension-Inhibited Protein Turnover Is Sufficient to Physically Control Gene Circuits] | ||
•[http://www.cell.com/biophysj/abstract/S0006-3495(14)03742-4] | •[http://www.cell.com/biophysj/abstract/S0006-3495(14)03742-4 Stochastic Control of Intracellular Latency and Transactivation in Human Immunodeficiency Virus Type 1 (HIV-1)] | ||
•[http://www.cell.com/biophysj/abstract/S0006-3495(11)02938-9] | •[http://www.cell.com/biophysj/abstract/S0006-3495(11)02938-9 Irreversible Thermodynamics of Transcriptional Regulation] | ||
•[http://www.cell.com/biophysj/abstract/S0006-3495(14)01482-9] | •[http://www.cell.com/biophysj/abstract/S0006-3495(14)01482-9 The Engineering of Artificial Cellular Systems using Synthetic Biology Approaches] | ||
•[http://www.cell.com/biophysj/abstract/S0006-3495(12)04019-2] | •[http://www.cell.com/biophysj/abstract/S0006-3495(12)04019-2 Microfluidics Assisted Cell Screening] | ||
==Plasmid== | ==Plasmid== | ||
• [http://www.sciencedirect.com/science/article/pii/S0147619X14000882] | • [http://www.sciencedirect.com/science/article/pii/S0147619X14000882 Plasmids in the driving seat: The regulatory RNA Rcd gives plasmid ColE1 control over division and growth of its E. coli host] | ||
• [http://www.sciencedirect.com/science/article/pii/S0147619X15300044] | • [http://www.sciencedirect.com/science/article/pii/S0147619X15300044 Transformation of Shewanella baltica with ColE1-like and P1 plasmids and their maintenance during bacterial growth in cultures] | ||
• [http://www.sciencedirect.com/science/article/pii/S0147619X14000559] | • [http://www.sciencedirect.com/science/article/pii/S0147619X14000559 Mechanisms of plasmid segregation: Have multicopy plasmids been overlooked?] | ||
• [http://www.sciencedirect.com/science/article/pii/S0147619X14000031] | • [http://www.sciencedirect.com/science/article/pii/S0147619X14000031 Effect of growth rate and selection pressure on rates of transfer of an antibiotic resistance plasmid between E. coli strains] | ||
• [http://www.sciencedirect.com/science/article/pii/S0147619X13000954] | • [http://www.sciencedirect.com/science/article/pii/S0147619X13000954 New quantitative methods for measuring plasmid loss rates reveal unexpected stability] | ||
• [http://www.sciencedirect.com/science/article/pii/S0147619X1200008X] | • [http://www.sciencedirect.com/science/article/pii/S0147619X1200008X Evaluating quantitative methods for measuring plasmid copy numbers in single cells] | ||
Revision as of 09:34, 28 August 2015
eLIFE
July 2015
Search: Computational and Systems Biology
• Expression noise facilitates the evolution of gene regulation
Nature Reviews of Microbiology
September 2015 Issue 9 Vol 13
• Review Highlights: Biofilms: Oscillations relieve the siege
• Article Series: Bacterial protein networks: properties and functions
• Reviews: The yin and yang of hepatitis C: synthesis and decay of hepatitis C virus RNA
• Genome Watch: Looking at Beijing’s skyline
• HipBA–promoter structures reveal the basis of heritable multidrug tolerance
August 2015 Issue 8 Vol 13
• Research Highlights: Obg controls bacterial persistence
July 2015 Issue 7 Vol 13
May 2015 Issue 6 Vol 13
• Research Highlights: Metalloregulatory riboswitches
Physical Review Letters
Volume 115, Issue 8, 21 August 2015
• Generalized Communities in Networks
• Aging Wiener-Khinchin Theorem
• Wiener-Khinchin Theorem for Nonstationary Scale-Invariant Processes
Volume 115, Issue 7, 14 August 2015
• Generalization of Pairwise Models to non-Markovian Epidemics on Networks
Volume 115, Issue 5, 31 July 2015
• Multidimensional Langevin Modeling of Nonoverdamped Dynamics
• Statistical Physics of Viral Capsids with Broken Symmetry
Volume 115, Issue 3, 17 July 2015
• Detention Times of Microswimmers Close to Surfaces: Influence of Hydrodynamic Interactions and Noise
• Physical Limit to Concentration Sensing Amid Spurious Ligands
Volume 115, Issue 2, 10 July 2015
• Turning Bacteria Suspensions into Superfluids
Volume 114, Issue 25, 26 June 2015
• Braiding a Flock: Winding Statistics of Interacting Flying Spins
Volume 114, Issue 24, 19 June 2015
• Identification of Patient Zero in Static and Temporal Networks: Robustness and Limitations
SCIENCE
• Membrane potential regulates growth
• Structure of a yeast spliceosome at 3.6-angstrom resolution
• Modified yeast produce opiates from sugar
• Complete biosynthesis of opioids in yeast
• Extended-resolution structured illumination imaging of endocytic and cytoskeletal dynamics
• Emergent genetic oscillations in a synthetic microbial consortium
• Synthetic communities, the sum of parts
• Engineering cell population behavior
• Allosteric transcriptional regulation via changes in the overall topology of the core promoter
• Differentiating between nutrient sources
• Fitness cost of antibiotic susceptibility during bacterial infection
• Biochemical basis of a 24-hour clock
• A protein fold switch joins the circadian oscillator to clock output in cyanobacteria
• An enhanced view of gene control
PLOS Biology
• Biofilm Formation As a Response to Ecological Competition
Journal of Mathematical Biology
• Theory of a microfluidic serial dilution bioreactor for growth of planktonic and biofilm populations
Microbiology and Molecular Biology Reviews
• Yeast Prions: Structure, Biology, and Prion-Handling Systems
Trends in Microbiology
• Collateral sensitivity of antibiotic-resistant microbes
• Entry and exit of bacterial outer membrane proteins
PNAS
Adaptación de microorganismos frente a ambientes cambiantes
• A mathematical model for adaptive prediction of environmental changes by microorganisms
Adaptación de levaduras frente a ambientes nutricionales diferentes
• Galactose metabolic genes in yeast respond to a ratio of galactose and glucose
Sistemas toxina-antitoxina y persistencia
• Large mutational target size for rapid emergence of bacterial persistence
Teoría de juegos, redes genéticas
• Bacterial strategies for chemotaxis response
• Phenotypic switching in gene regulatory networks
• Intrinsic noise in gene regulatory networks
Microfluidos
• High-sensitivity microfluidic calorimeters for biological and chemical applications
Molecular Microbiology
• Live cell imaging of SOS and prophage dynamics in isogenic bacterial populations
• A novel pathway for outer membrane protein biogenesis in Gram-negative bacteria
Cell
• Optofluidic Systems for Programmable In Vivo Pharmacology and Optogenetics
Biophysical Journal
•Isocost Lines Describe the Cellular Economy of Genetic Circuits
•Sensitivity Analysis and Model Reduction Applied to Adapting Biological Systems
•Information Transmission through Pancreatic Beta Cell Signaling Pathways
•Irreversible Thermodynamics of Transcriptional Regulation
•The Engineering of Artificial Cellular Systems using Synthetic Biology Approaches
•Microfluidics Assisted Cell Screening
Plasmid
• Mechanisms of plasmid segregation: Have multicopy plasmids been overlooked?
• New quantitative methods for measuring plasmid loss rates reveal unexpected stability
• Evaluating quantitative methods for measuring plasmid copy numbers in single cells