UA Biophysics:Protocols: Difference between revisions

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&bull; [[UA Biophysics:Protocols:Ampicillin|Ampicillin]]<br>  
&bull; [[UA Biophysics:Protocols:Ampicillin|Ampicillin]]<br>  
&bull; [[UA Biophysics:Protocols:Kanamycin|Kanamycin]]<br>  
&bull; [[UA Biophysics:Protocols:Kanamycin|Kanamycin]]<br>  
&bull; [[UA Biophysics:Protocols:Chloramphenicol|Chloramphenicol]]<br>  
&bull; [[UA Biophysics:Protocols:Chloramphenicol|Chloramphenicol]]<br>
 
&bull; [[UA Biophysics:Protocols:Erythromycin|Erythromycin]]
==BACTERIA STOCK==
 
&bull; [[UA Biophysics:Protocols:Stocks|Stocks]]<br>


==BUFFERS==
==BUFFERS==


&bull; [[UA Biophysics:Protocols:PBS|PBS]]<br>
&bull; [[UA Biophysics:Protocols:PBS|PBS]]<br>
&bull; [[UA Biophysics:Protocols:TAE 10X|TAE 10X]]<br>
&bull; [[UA Biophysics:Protocols:Calcein|Calcein]]<br>
&bull; [[UA Biophysics:Protocols:Elution Buffer|Elution Buffer]]<br>
&bull; [[UA Biophysics:Protocols:K2HPO4 KH2PO4 Buffer|KH2PO4 Buffer]]<br>


==CHEMICALS==
==CHEMICALS==


&bull; [[UA Biophysics:Protocols:KOH|KOH]]<br>
&bull; [[UA Biophysics:Protocols:KOH|KOH]]<br>
&bull; [[UA Biophysics:Protocols:NOH|NOH]]<br>


==EXTRACTION==
==EXTRACTION==
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&bull; [[UA Biophysics:Protocols:Lipid Extraction|Lipid Extration]]<br>
&bull; [[UA Biophysics:Protocols:Lipid Extraction|Lipid Extration]]<br>
&bull; [[UA Biophysics:Protocols:Carotenoid Extration|Carotenoid Extration]]<br>
&bull; [[UA Biophysics:Protocols:Carotenoid Extration|Carotenoid Extration]]<br>
==IMMUNOSTAINING==
&bull; [[UA Biophysics:Protocols:Lymphocytes immunostaining with anti-AlphaTubulin|Lymphocytes immunostaining with anti-AlphaTubulin]]<br>
&bull; [[UA Biophysics:Protocols:Tubulin Polymerization with AlexaFluor 488 staining|Tubulin Polymerization with AlexaFluor 488 staining]]<br>


==MEDIA==
==MEDIA==
Line 42: Line 48:
&bull; [[UA Biophysics:Protocols:LB 1L|LB 1L]]<br>
&bull; [[UA Biophysics:Protocols:LB 1L|LB 1L]]<br>
&bull; [[UA Biophysics:Protocols:LB Plates 1L|LB Plates 1L]]<br>
&bull; [[UA Biophysics:Protocols:LB Plates 1L|LB Plates 1L]]<br>
&bull; [[UA Biophysics:Protocols:M9 plates|M9 Plates]]<br>
&bull; [[UA Biophysics:Protocols:SD 1L|SD 1L]]<br>
&bull; [[UA Biophysics:Protocols:SD 1L|SD 1L]]<br>
&bull; [[UA Biophysics:Protocols:1M MgSO4|1M MgSO<sub>4</sub>]]<br>
&bull; [[UA Biophysics:Protocols:1M MgSO4|1M MgSO<sub>4</sub>]]<br>
&bull; [[UA Biophysics:Protocols:0.1M CaCl2|0.1M CaCl<sub>2</sub>]]<br>
&bull; [[UA Biophysics:Protocols:0.1M CaCl2|0.1M CaCl<sub>2</sub>]]<br>
&bull; [[UA Biophysics:Protocols:TB 1L|TB 1L]]<br>


==MICROFLUIDICS==
==MICROFLUIDICS==
Line 51: Line 59:
&bull; [[UA Biophysics:Protocols:Master fabrication|Master fabrication]]<br>
&bull; [[UA Biophysics:Protocols:Master fabrication|Master fabrication]]<br>
&bull; [[UA Biophysics:Protocols:Plasma Cleaner Protocol|Plasma Cleaner Protocol]]<br>
&bull; [[UA Biophysics:Protocols:Plasma Cleaner Protocol|Plasma Cleaner Protocol]]<br>
&bull; [[UA Biophysics:Protocols:Cell Insertion Mother Machine|Cell Insertion Mother Machine]]<br>
&bull; [https://s3-us-west-2.amazonaws.com/oww-files-public/d/d5/Mother_Machine.pdf Mother Machine]<br>
&bull; [[UA Biophysics:Protocols:Microfluidics Valves|Microfluidics Valves]]<br>
&bull; [[UA Biophysics:Protocols:Microfluidics Valves|Microfluidics Valves]]<br>
&bull; [[UA Biophysics:Microfluidic System for Biofilm growth|Microfluidic System for Biofilm growth]]<br>
&bull; [https://s3-us-west-2.amazonaws.com/oww-files-public/7/7f/Fabricaci%C3%B3n_de_chips_para_microflu%C3%ADdos.pdf Microfluidic System for Biofilm growth]<br>
&bull; [https://s3-us-west-2.amazonaws.com/oww-files-public/3/3b/Protocolo_Crecimiento_Biopel%C3%ADcula_en_SPIM.pdf Biofilm growth]<br>


==MOLECULAR BIOLOGY==
==MOLECULAR BIOLOGY==


&bull; [[UA Biophysics:Protocols:Q5|Q5 Polymerase]]<br>
&bull; [[UA Biophysics:Protocols:Q5|Q5 Polymerase]]<br>
&bull; [[UA Biophysics:Protocols:Phusion|Phusion Polymerase]]<br>
&bull; [[UA Biophysics:Protocols:Phusion|Phusion Polymerase]]<br>


==PLASMIDS AND RELATED==
==PLASMIDS AND RELATED==


&bull; [https://www.sigmaaldrich.com/content/dam/sigma-aldrich/docs/Sigma/Bulletin/na0150bul.pdf GenElute<sup>TM</sup> HP Plasmid Miniprep Kit]<br>
&bull; [https://www.sigmaaldrich.com/deepweb/assets/sigmaaldrich/product/documents/450/621/00007374w-mk.pdf GenElute<sup>TM</sup> HP Plasmid Miniprep Kit]<br>
&bull; [http://openwetware.org/wiki/Preparing_chemically_competent_cells Preparing Chemically Competent Cells]<br>
&bull; [http://openwetware.org/wiki/Transforming_chemically_competent_cells Transforming Chemically Competent]<br>
&bull; [[UA Biophysics:Protocols:Competent Cells|Competent Cells]]<br>
&bull; [[UA Biophysics:Protocols:Competent Cells|Competent Cells]]<br>
&bull; [[UA Biophysics:Protocols:Transformation of Competent Cells|Transformation of Competent Cells]]<br>
&bull; [[UA Biophysics:Protocols:Transformation of Competent Cells|Transformation of Competent Cells]]<br>
&bull; [[UA Biophysics:Protocols:Yeast Miniprep|Yeast Miniprep]]<br>
==BACTERIA==
&bull; [[UA Biophysics:Protocols:Stocks|Stocks]]<br>
&bull; [[UA Biophysics:Protocols:Bacteria for Lipid Extraction|Bacteria for Lipid Extraction]]<br>


==PHAGES==
==PHAGES==


&bull; [[UA Biophysics:Protocols:Marking T4 DNA with DAPI|Marking T4 DNA with DAPI]]<br>
&bull; [[UA Biophysics:Protocols:Marking T4 DNA with DAPI|Marking T4 DNA with DAPI]]<br>
&bull; [[UA Biophysics:Protocols:Direct Plating Plaque Assay|Direct Plating Plaque Assay]]<br>
&bull; [[UA Biophysics:Protocols:Small Drop Plaque Assay System|Small Drop Plaque Assay System]]<br>


&bull; [[UA Biophysics:Protocols:Direct Plating Plaque Assay|Direct Plating Plaque Assay]]<br>
==C.ELEGANTS==


&bull; [[UA Biophysics:Protocols:Small Drop Plaque Assay System|Small Drop Plaque Assay System]]<br>
&bull; [[UA Biophysics:Protocols:Buffer M9 para C. elegans|Buffer M9 para C. elegans<sub>2</sub>]]<br>
&bull; [[UA Biophysics:Protocols:Buffer 1M KPO4 pH 6.0|Buffer 1M KPO4 pH 6.0<sub>2</sub>]]<br>
&bull; [[UA Biophysics:Protocols:Cholesterol in ethanol 5 mg/ml|Cholesterol in ethanol 5 mg/ml<sub>2</sub>]]<br>
&bull; [[UA Biophysics:Protocols:Nematode Growth Medium (NGM)|Nematode Growth Medium (NGM)<sub>2</sub>]]<br>
&bull; [[UA Biophysics:Protocols:Siembra de nemátodos|Siembra de nemátodos<sub>2</sub>]]<br>
&bull; [[UA Biophysics:Protocols:Freezing C. elegans Strains|Freezing C. elegans Strains<sub>2</sub>]]<br>
&bull; [[UA Biophysics:Protocols:Buffer Freezing C. elegans Strains|Buffer Freezing C. elegans Strains<sub>2</sub>]]<br>


==PREPARACIÓN DE LUV Y GUV==
==VESICLES==


&bull; [[UA Biophysics:Protocols: Lipid stock|Lipid stock]]<br>
&bull; [[UA Biophysics:Protocols: Multilamellar Vesicles|Multilamellar Vesicles]]<br>
&bull; [[UA Biophysics:Protocols: LUV|LUV]]<br>
&bull; [[UA Biophysics:Protocols: LUV|LUV]]<br>
&bull; [[UA Biophysics:Protocols: GUV|GUV]]<br>
&bull; [[UA Biophysics:Protocols: GUV|GUV]]<br>



Latest revision as of 07:37, 2 April 2024


ANTIBIOTICS STOCK

Ampicillin
Kanamycin
Chloramphenicol
Erythromycin

BUFFERS

PBS
TAE 10X
Calcein
Elution Buffer
KH2PO4 Buffer

CHEMICALS

KOH
NOH

EXTRACTION

Lipid Extration
Carotenoid Extration

IMMUNOSTAINING

Lymphocytes immunostaining with anti-AlphaTubulin
Tubulin Polymerization with AlexaFluor 488 staining

MEDIA

M9 Salts (5x) 1L
M9 (5x) 1L
LB 1L
LB Plates 1L
M9 Plates
SD 1L
1M MgSO4
0.1M CaCl2
TB 1L

MICROFLUIDICS

Soft lithography
Master fabrication
Plasma Cleaner Protocol
Mother Machine
Microfluidics Valves
Microfluidic System for Biofilm growth
Biofilm growth

MOLECULAR BIOLOGY

Q5 Polymerase
Phusion Polymerase

PLASMIDS AND RELATED

GenEluteTM HP Plasmid Miniprep Kit
Competent Cells
Transformation of Competent Cells
Yeast Miniprep

BACTERIA

Stocks
Bacteria for Lipid Extraction

PHAGES

Marking T4 DNA with DAPI
Direct Plating Plaque Assay
Small Drop Plaque Assay System

C.ELEGANTS

Buffer M9 para C. elegans2
Buffer 1M KPO4 pH 6.02
Cholesterol in ethanol 5 mg/ml2
Nematode Growth Medium (NGM)2
Siembra de nemátodos2
Freezing C. elegans Strains2
Buffer Freezing C. elegans Strains2

VESICLES

Lipid stock
Multilamellar Vesicles
LUV
GUV

TURBIDOSDOSTATS

Plate turbidostat user manual
Revolver turbidostat with interchanging media


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