Tregwiki:Main Page

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*Binding sites:
*Binding sites:
** Look up: In databases of known [[Tregwiki:Collected regulatory elements|Collected regulatory elements]]
** Look up: In databases of known [[Tregwiki:Collected regulatory elements|Collected regulatory elements]]
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** [[Tools for matrices|Visualize and compare your results]]
** Scan: [[Tregwiki:Scanning promotors|Scanning promotors]] or enhancers for binding site matrices or consensus sequences
** Scan: [[Tregwiki:Scanning promotors|Scanning promotors]] or enhancers for binding site matrices or consensus sequences
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** Predict: [http://www.stud.uni-potsdam.de/~haussler/master Discover motifs], [[Tregwiki:Calculate statistics|Calculate statistics]] of DNA-words or [[[Tregwiki:Discover motif combinations|Discover motif combinations]]
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** Predict: [http://www.stud.uni-potsdam.de/~haussler/master Discover motifs], [[Tregwiki:Calculate statistics|Calculate statistics]] of DNA-words or [[Tregwiki:Discover motif combinations|Discover motif combinations]]
* [[Tregwiki:Recent bibliography|Recent papers on regulation]]
* [[Tregwiki:Recent bibliography|Recent papers on regulation]]

Current revision

Welcome to Max's Wiki on Transcriptional Regulation. (who's max?)

"Man is a tool-using Animal. Nowhere do you find him without tools; without tools he is nothing, with tools he is all." (Thomas Carlyle)

I am collecting links related to bioinformatics and binding site prediction (Why is this a difficult problem?). There are usually many different solutions for every problem in bioinformatics. This list might shorten your mileage when choosing an appropriate one.

  • Meta-Websites that integrate promotor download, motif matching/discovery

There are a couple of Similar link collections on the web. Sometimes Gene Ontology related tools are useful when working with transcriptional regulation.

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