Template:SBB-Protocols Assay2

Strepavidin-Binding Assay

Goals: 
1) To Screen 16 constructs for their ability to bind strepavidin on the cell surface
2) To devise a method for quantifying the relative amount of strepavidin bound by the constructs

Procedure

Transforming and Plating

1) In a 96-well PCR plate, fill wells with a mixture of 220uL competent cells, 30ul KCM salts, and 50 uL ddH2O. 
2) Add 1uL of a construct to each well.
2) Incubate for 10' on ice, heat shock at 40C for 1', cool for another 2', and then add 90uL of LB media. 
Cover and shake for 15' at 37C.
3) Plate on chloramphenacol and incubate at 37C for 24h.

Inoculating

1) For each construct, pick 2 colonies and inoculate in x mL of x media, with and without arabinose (1:1000). 
2) Shake at 37C for 24h.

For all 16 constructs & the 3 controls: grow them with/without arabinose to saturation in 1-3uL culture (grown in 24 well blocks)
96 well plate:
- each well add 300ul PBS, 15ul Streptavidin, 25ul of cell culture (the first time we do this, it will be saturated culture)
- incubate at 37C without shaking for 30mins-1hour
- spin down cells for 1 min at full speed to pellet cells - check in UV box for bright white color

Controls:
pBca9145-Bca 9494 (positive control that displays cpx, a streptavidin binding peptide under Pbad)
DH10B (no plasmid, negative control)
pBca9495CA-Bca1144 (negative control: backbone)

Can play with:
- streptavidin concentrations
- mid-log vs. saturation
- quantitative assays (number of washes, volume...)

JCA: This needs much more detail. In particular, write up the details about the volumes of materials, composition of the assays, times and temperatures at each step, etc.

April 22

- today we tried to do the assay with 25ul cells in 300ul PBS with 15ul Streptavidin
- we could actually visually see binding for 4 constructs (one control?)
- we tried to quantify it with the Tecan but we just got background

for Monday
- try 200ul cells
- spin down
- discard the media
- resuspend in 200ul PBS
- use 5ul Streptavidin
- incubate at 37 for 30 mins
- spin down, remove supernatant
- check visually
- resuspend in 50 ul of PBS and load on plate for the Tecan
- analyze measurements