Talk:Wikiomics:BLAST tutorial: Difference between revisions
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Darek Kedra (talk | contribs) m (→BLAST ofspring: new section) |
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*'''[[User:Darek Kedra|darked]] 09:43, 12 February 2010 (EST)''': | *'''[[User:Darek Kedra|darked]] 09:43, 12 February 2010 (EST)''': | ||
== BLAST | == BLAST offspring == | ||
There is a large number of BLAST-like algorithms, trying to i.e. speed up the search by sacrificing sensitivity, or modify it to suit specific tasks, like genome-2-genome comparison. | There is a large number of BLAST-like algorithms, trying to i.e. speed up the search by sacrificing sensitivity, or modify it to suit specific tasks, like genome-2-genome comparison. | ||
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* PLAST : Parallel Local Alignment Search Tool for Database Comparison | * PLAST : Parallel Local Alignment Search Tool for Database Comparison | ||
http://www.irisa.fr/symbiose/projects/plast/ | http://www.irisa.fr/symbiose/projects/plast/ | ||
=Decypher & BLAST= | |||
* http://edwards.sdsu.edu/wiki/index.php/Difference_between_timelogic_and_NCBI_blastall |
Latest revision as of 05:07, 25 March 2010
What are the parameters to use to limit the number of allignmets produced by blast for each query sequence?
I seem to remember it is '-b xxx' or something....
--Dan 14:21, 15 January 2010 (EST)
You are right, -b is the switch for blastall. Two relevant lines from blastall --help
-v Number of database sequences to show one-line descriptions for (V) [Integer] default = 500 -b Number of database sequence to show alignments for (B) [Integer] default = 250
- darked 09:43, 12 February 2010 (EST):
BLAST offspring
There is a large number of BLAST-like algorithms, trying to i.e. speed up the search by sacrificing sensitivity, or modify it to suit specific tasks, like genome-2-genome comparison. Before creating a separate page I will be dumping here such links *darked 07:39, 18 March 2010 (EDT):
- PLAST : Parallel Local Alignment Search Tool for Database Comparison
http://www.irisa.fr/symbiose/projects/plast/