Talk:PersonalGenomes@Home: Difference between revisions
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==Have questions about the project or the data? Please ask them here!== | ==Have questions about the project or the data? Please ask them here!== | ||
* your question. | |||
===From PGP4=== | |||
http://www.personalgenomes.org/data/PGP9.3/ | I'm wondering about the exon data that are currently here: http://www.personalgenomes.org/data/PGP9.3/ | ||
* A little bit about the format/quality of these data can be found in the [http://www.personalgenomes.org/data/PGP9.3/README.txt README]. --[[User:Alexander Wait Zaranek|AWZ]] 15:19, 13 April 2009 (EDT) | |||
How does one read a .bed file? Ia there any point in a lay person even attempting to do this? | How does one read a .bed file? Ia there any point in a lay person even attempting to do this? | ||
* A bioinformatician might upload a bed file to [http://genome.ucsc.edu/cgi-bin/hgCustom?hgsid=130026527&clade=(null)&org=Human&db=hg18&hgct_do_add=1 UCSC] by cutting and pasting the URL of the bed file eg. http://www.personalgenomes.org/data/PGP9.3/004/hg18pgp4.bed.gz into the dialog box at UCSC. You can then use the genome browser to do various things such as explore conversation of variants in other organisms or to browse various annotations. It might be too much trouble for a lay person but this is a great question! --[[User:Alexander Wait Zaranek|AWZ]] 15:19, 13 April 2009 (EDT) | |||
Can you say anything about the status of the Trait-o-matic? | Can you say anything about the status of the Trait-o-matic? | ||
* This should be available soon. One area of concern is that Trait-O-Matic can make variants--that are actually sequencing errors--seem to be clinically important. We are continuing to refine the process by which variants are "called" from the underlying data. Prior to taking any clinical action we expect participants to confirm variants in a CLIA approved laboratory. We'd also like to avoid the, unnecessary, worry of seeing sequencing errors in a "Trait-o-matic" report. --[[User:Alexander Wait Zaranek|AWZ]] 15:19, 13 April 2009 (EDT) | |||
Thanks as always, | Thanks as always, | ||
Misha | Misha | ||
aka PGP4 | aka PGP4 | ||
==Older questions and answers== | ==Older questions and answers== |
Revision as of 12:19, 13 April 2009
Have questions about the project or the data? Please ask them here!
From PGP4I'm wondering about the exon data that are currently here: http://www.personalgenomes.org/data/PGP9.3/
How does one read a .bed file? Ia there any point in a lay person even attempting to do this?
Can you say anything about the status of the Trait-o-matic?
Thanks as always, Misha aka PGP4
Older questions and answers
Cleanup
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