Talk:Dahlquist:Yeast Transcription Factors: Difference between revisions
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* De Nicola et al. 2007 | * De Nicola et al. 2007 | ||
* Check with online compendia, Hughes and Princeton | * Check with online compendia, Hughes and Princeton | ||
=== Bibliography === | |||
== Completed == | == Completed == | ||
Revision as of 14:00, 28 October 2008
Kevin, let's use this page to communicate a To Do list. — Kam D. Dahlquist 18:21, 22 September 2008 (EDT)
Back to Dahlquist Lab main page.
To Do
Wild type
- Run MAPPFinder for all timepoints, increased and decreased
- Edit GO results lists for redundancy and group related GO terms
- STEM clustering (might be done; Kam needs to check)
- EDGE statistics
- Re-run clusters/groups of genes through TF finding databases
cin5Δ
- Run MAPPFinder for all timepoints, increased and decreased
- Edit GO results lists for redundancy and group related GO terms
- STEM clustering (might be done; Kam needs to check)
- EDGE statistics
- Re-run clusters/groups of genes through TF finding databases
MAPPs
See also MAPP Archive page.
- One humongous consolidated MAPP (also Excel spreadsheet), then individual MAPPs for each data source.
- Need to finish Cin5p target MAPPs for:
- Workman et al.
- Hu et al.
- TVSM
- Yeastract
Comparator Expression Datasets
- Gasch et al. 2000
- Causton et al. 2000
- Sahara et al. 2002
- Schade et al. 2004
- Kandror et al. 2004
- Murata et al. 2006
- Tai et al. 2007
- De Nicola et al. 2007
- Check with online compendia, Hughes and Princeton
Bibliography
Completed
Wild type
- Excel-based statistics
- multtest
cin5Δ
- Excel-based statistics
- multtest
MAPPs
- consolidated Cin5p target MAPP for Lee, Harbison, Tan. (redundant, gene appears more than once if in multiple papers)
