Talk:CH391L/S13/CAD: Difference between revisions
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**'''[[User:Gabriel Wu|Gabriel Wu]] 15:13, 4 February 2013 (EST)''': [http://j5.jbei.org j5] is a program coming from Nathan Hillson at the Joint Bioenergy Institute at Berkeley (JBEI). It automatically designs oligonucleotides for gene assembly for Gibson and Gibson-like synthesis. | **'''[[User:Gabriel Wu|Gabriel Wu]] 15:13, 4 February 2013 (EST)''': [http://j5.jbei.org j5] is a program coming from Nathan Hillson at the Joint Bioenergy Institute at Berkeley (JBEI). It automatically designs oligonucleotides for gene assembly for Gibson and Gibson-like synthesis. | ||
**'''[[User:Gabriel Wu|Gabriel Wu]] 16:56, 4 February 2013 (EST)''': I think for the Basic Features, things like VectorNTI (commercial), amplify (virtual PCR), and maybe even sequence aligners like BLAST might be considered CAD at this basic level. | **'''[[User:Gabriel Wu|Gabriel Wu]] 16:56, 4 February 2013 (EST)''': I think for the Basic Features, things like VectorNTI (commercial), [http://en.wikipedia.org/wiki/Geneious geneious], amplify (virtual PCR), and maybe even sequence aligners like BLAST might be considered CAD at this basic level. |
Revision as of 14:58, 4 February 2013
- Kevin Baldridge 03:31, 30 January 2013 (EST):If anyone has any suggestions or links, it's a really new topic to me so I'd be glad of the tips. Thanks!
- Jeffrey E. Barrick 10:43, 1 February 2013 (EST):Here are some ideas to get started:
- CLOTHO is what I hear the most about, but it seems very buggy when I try to use it on my Mac, so I haven't been able to do anything with it.
- TinkerCell has a neat interface and some simulation functions, but I don't think it is supported any more.
- TeselaGen is a company with a Beta of a synthetic biology tool going on right now. You can register and play with it for free, I believe.
- The iGEM team usually ends up using Geneious to design their constructs, but it doesn't have any real CAD functions except for editing sequences with annotations and drawing nice pictures.
- Also, check out the software division of iGEM. It has a lot of "Best-X-tool" prizes, which must mean that X is a synthetic biology CAD framework.
- Kevin Baldridge 14:33, 2 February 2013 (EST):Thanks, these are all great leads and better than most of what I was able to find with a quick google search. I'll flesh this out more today
- Gabriel Wu 15:13, 4 February 2013 (EST): j5 is a program coming from Nathan Hillson at the Joint Bioenergy Institute at Berkeley (JBEI). It automatically designs oligonucleotides for gene assembly for Gibson and Gibson-like synthesis.
- Gabriel Wu 16:56, 4 February 2013 (EST): I think for the Basic Features, things like VectorNTI (commercial), geneious, amplify (virtual PCR), and maybe even sequence aligners like BLAST might be considered CAD at this basic level.