Talk:20.109(S14):Phylogenetic and primer analyses (Day7)

From OpenWetWare

(Difference between revisions)
Jump to: navigation, search
(W/F microbiota)
(W/F microbiota)
Line 464: Line 464:
|[[Media:WFSilver252C8.txt]]
|[[Media:WFSilver252C8.txt]]
|[[Media:WFSilver252C1.txt]]
|[[Media:WFSilver252C1.txt]]
-
|
+
|[[Media:WFSilver252C1B.txt]]
|
|
|
|

Revision as of 17:02, 5 March 2014

Contents

General notes and updates

T/R microbiota

Linking a file code: [[Media: filename.extension]] or optionally [[Media: filename.extension | description]].

Team Color Team Member Gull ID Sequence 1 (txt) Sequence 2 (txt) Sequence 3 (txt) Sequence 4 (txt) Sequence 5 (txt) Sequence 6 (txt) Sequence 7 (txt) Sequence 8 (txt) Species overview (xlsx) Alignment (mas) Tree (pdf)
Red AK 308 Media:TRRed308C1.txt Media:TRRed308C3.txt Media:TRRed308C4.txt Media:TRRed308C6.txt Media:TRRed308C8.txt Media:TRRed308.xls
Red LT 308 Media:TRRed308C2B.txt Media:TRRed308C3B.txt Media:TRRed308C4B.txt Media:TRRed308C5B.txt Media:TRRed308C6B.txt Media:TRRed308C8B.txt Media:TRRed308.xls
All SKH 308 Media:TRRed308C2star.txt Media:TRRed308C3star.txt Media:TRRed308C4star.txt Media:TRRed308star.xlsx
Orange CT-Q 312 Media:TROrange312C1.txt Media:TROrange312C2.txt Media:TROrange312C3.txt Media:TROrange312.xlsx
Orange AN 308 Media: TROrange308AC2.txt Media: TROrange308AC3.txt Media: TROrange308AC4.txt Media: TROrange308AC5.txt Media: TROrange308AC.xlsx
Yellow REDO 312 Media: 312-2.txt Media: 312-4.txt Media: 312-5.txt Media: 312-7.txt Media: 312-10.txt Media: 312-REDO-samples.xlsx
Yellow SW 312 Media: TRYellow312C1b.txt Media: TRYellow312C2.txt Media: TRYellow312C2b.txt Media: TRYellow312C6B.txt Media: TRYellow312.xlsx
Green CB 304 Media: TRGreen304C1.txt Media: TRGreen304C2.txt Media: TRGreen304C7R_R.txt Media: TRGreen304CB.xlsx Media: TR-304-Alignment.mas Media: TR-304-Tree.pdf
Green CR 304 Media: TRGreen304C11.txt Media: TRGreen304C12.txt Media: TRGreen304C13.txt Media: TRGreen304C14F.txt Media: TRGreen304C15.txt Media: TRGreen304CR.xlsx Media: TR-304-Alignment.mas Media: TR-304-Tree.pdf
Blue KT 304 Media: TRBlue304C3.txt Media: TR-304-Alignment.mas Media: TR-304-Tree.pdf
Blue MG 252 (see Pink) Media: TR-252-Aligment-partial.mas Media: TR-252-Tree-partial.pdf
Pink RCB 252 Media: TRPink252C1.txt Media: TRPink252C3.txt Media: TRPink252C5.txt Media: TR252Excel.xlsx
Pink HMH / MG 252 Media: TRPink252C3B.txt Media: TRPink252C4B.txt Media: TRPink252C5B.txt Media: TRPink252C6B.txt



W/F microbiota

Linking a file code: [[Media: filename.extension]] or optionally [[Media: filename.extension | description]].

Team Color Team Member Gull ID Sequence 1 (txt) Sequence 2 (txt) Sequence 3 (txt) Sequence 4 (txt) Sequence 5 (txt) Sequence 6 (txt) Sequence 7 (txt) Sequence 8 (txt) Species overview (xlsx) Alignment (mas) Tree (pdf)
Red
Red JQX 286 Media:WFRed286C1B.txt Media:WFRed286C2B.txt Media:WFRed286C3B.txt Media:WFRed286C4B.txt Media:WFRed286C5B.txt Media:WFRed286C6B.txt Media:WFRed286C8B.txt
Orange EAK 286 Media:WFOrange286C9.txt Media:Orange286.xlsx
Orange
Yellow
Yellow
Green
Green
Blue
Blue Media:WFBlue274C2.txt (Beginning and end of sequence is correct, middle of sequence is ambiguous due to early termination) Media:WFBlue274C3.txt Media:WFBlue274C5.txt
Pink MZ 274
Pink GG 274
Purple
Purple
Silver MO 252 Media:WFSilver252C8.txt Media:WFSilver252C1.txt Media:WFSilver252C1B.txt
Silver SW 252 Media:WFSilver252C2B.txt Media:WFSilver252C3.txt
White JRI 260 Media:WFWhite260C1.txt short sequence Media:WFWhite260C6.txt‎ Media:WFWhite260C7.txt‎ Media: WFWhite260C8.txt Media: WFWhite260.xlsx
White CTC 260 Media:WFWhite260C14.txt Media:WFwhite260.xlsx See above row

T/R microsporidia gels

Gel number Reference samples Group 1 Group 2 Picture
T/R 1 Specificity (VC, EH, mixture) Orange Yellow Media:TR1.BMP
T/R 2 Specificity (VC, EH, mixture) Blue W/F Green Media:TR2.BMP
T/R 3 Sensitivity (EH: lo, mid, hi) Red Green
T/R 4 Sensitivity (EH: lo, mid, hi) Pink Blue



W/F microsporidia gels

Gel number Reference samples Group 1 Group 2 Picture
W/F 1 Specificity (VC, EH, mixture) Blue Purple
W/F 2 Specificity (VC, EH, mixture) Silver White
W/F 3 Sensitivity (EH: lo, mid, hi) Red Orange
W/F 4 Sensitivity (EH: lo, mid, hi) Yellow Pink



Personal tools