Talk:20.109(S14):Phylogenetic and primer analyses (Day7)

From OpenWetWare

(Difference between revisions)
Jump to: navigation, search
Line 12: Line 12:
|-
|-
|252
|252
-
|[[Media:TR-alignment-partial.mas]]
+
|[[Media:TR-alignment-partial1.mas]]
-
|[[Media:TR-tree-partial.pdf]]
+
|[[Media:TR-tree-partial1.pdf]]
|-
|-
|
|

Revision as of 22:19, 4 March 2014

Contents

General notes and updates

Final sample-wide alignment files and trees

One representative from each sample-based group should post a .mas and .pdf file here when data are in final form. That way we'll all have quick access to the location sub-trees.

Sample # Alignment file (.mas) Tree file (.pdf)
252 Media:TR-alignment-partial1.mas Media:TR-tree-partial1.pdf

T/R microbiota

Linking a file code: [[Media: filename.extension]] or optionally [[Media: filename.extension | description]].

Team Color Team Member Gull ID Sequence 1 (txt) Sequence 2 (txt) Sequence 3 (txt) Sequence 4 (txt) Sequence 5 (txt) Sequence 6 (txt) Sequence 7 (txt) Sequence 8 (txt) Species overview (xlsx) Alignment (mas) Tree (pdf)
Red AK 308 Media:TRRed308C1.txt Media:TRRed308C2.txt Media:TRRed308C3.txt Media:TRRed308C4.txt Media:TRRed308C6.txt Media:TRRed308C8.txt Media:TRRed308.xls
Red LT 308 Media:TRRed308C2B.txt Media:TRRed308C3B.txt Media:TRRed308C4B.txt Media:TRRed308C5B.txt Media:TRRed308C6B.txt Media:TRRed308C8B.txt Media:TRRed308.xls
Orange CT-Q 312
Orange AN 308 Media: TROrange308AC2.txt Media: TROrange308AC3.txt Media: TROrange308AC4.txt Media: TROrange308AC5.txt Media: TROrange308AC.xlsx
Yellow
Yellow
Green CB 304 Media: TRGreen304C1.txt Media: TRGreen304C2.txt Media: TRGreen304C7R.txt Media: TRGreen304CB.xlsx Media: TR-304-Alignment.mas Media: TR-304-Tree.pdf
Green CR 304 Media: TRGreen304C11.txt Media: TRGreen304C12.txt Media: TRGreen304C13.txt Media: TRGreen304C14F.txt Media: TRGreen304C15.txt Media: TR_Green_304_C9-C15.xlsx Media: TR-304-Alignment.mas Media: TR-304-Tree.pdf
Blue KT 304 Media: TRBlue304C3.txt Media: TR-304-Alignment.mas Media: TR-304-Tree.pdf
Blue MG 252 N/A
Pink RCB 252 Media: TRPink252C1.txt Media: TRPink252C3.txt Media: TRPink252C5.txt Media: TR252Excel.xlsx
Pink HMH / MG 252 Media: TRPink252C3B.txt Media: TRPink252C4B.txt Media: TRPink252C5B.txt Media: TRPink252C6B.txt



W/F microbiota

Linking a file code: [[Media: filename.extension]] or optionally [[Media: filename.extension | description]].

Team Color Team Member Gull ID Sequence 1 (txt) Sequence 2 (txt) Sequence 3 (txt) Sequence 4 (txt) Sequence 5 (txt) Sequence 6 (txt) Sequence 7 (txt) Sequence 8 (txt) Species overview (xlsx) Alignment (mas) Tree (pdf)
Red
Orange
Orange
Yellow
Yellow
Green
Green
Blue
Blue
Pink
Pink
Purple
Purple
Platinum
Platinum
White
White

T/R microsporidia gels


W/F microsporidia gels


Personal tools