Talk:20.109(S14):Phylogenetic and primer analyses (Day7): Difference between revisions

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==W/F microbiome==
==W/F microbiota==


Linking a file code: <nowiki>[[Media: filename.extension]] or optionally [[Media: filename.extension | description]].</nowiki>
Linking a file code: <nowiki>[[Media: filename.extension]] or optionally [[Media: filename.extension | description]].</nowiki>
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| [[Media: WF-Blue_712-C7.txt]]
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| [[Media: WF-Blue_712.xlsx]]
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| [[Media: WF-712-Alignment(WF_Blue+TR_Orange).mas]]
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| [[Media: WF-712-Alignment(WF_Blue+TR_Orange).pdf]]
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|Blue
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| Sachin Shinde
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| [[Media: WF-Blue_702-C7.txt]]
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| [[Media: WF-702-alignment(TR-Red,TR-Blu,WF-Red,WF-Blu).mas]]
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|Pink
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|Alice Chen
|712
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|[[Media: WF-Pink_712C4.txt]]
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|Pink
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|Helen He
|709
|[[Media: WF-Pink_709-B1.txt]]
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|Purple
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|Jenny Van
|664
|[[Media: WF-Purple_664-C1.txt]]
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|Purple
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|Zeinab Aboud
|739
|[[Media: WF-Purple_739-c1.txt]]
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|Platinum
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|Eric Klinkhammer
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|732
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Revision as of 18:39, 4 March 2014

General notes and updates

Final sample-wide alignment files and trees

One representative from each sample-based group should post a .mas and .pdf file here when data are in final form. That way we'll all have quick access to the location sub-trees.

Sample # Alignment file (.mas) Tree file (.pdf)

T/R microbiota

Linking a file code: [[Media: filename.extension]] or optionally [[Media: filename.extension | description]].

Team Color Team Member Gull ID Sequence 1 (txt) Sequence 2 (txt) Sequence 3 (txt) Sequence 4 (txt) Sequence 5 (txt) Sequence 6 (txt) Sequence 7 (txt) Sequence 8 (txt) Species overview (xlsx) Alignment (mas) Tree (pdf)
Red AK 308 Media:TRRed308C1.txt Media:TRRed308C2.txt Media:TRRed308C3.txt Media:TRRed308C4.txt Media:TRRed308C6.txt Media:TRRed308C8.txt Media:TRRed308.xls
Red LT 308 Media:TRRed308C2B.txt Media:TRRed308C3B.txt Media:TRRed308C4B.txt Media:TRRed308C5B.txt Media:TRRed308C6B.txt Media:TRRed308C8B.txt Media:TRRed308.xls
Orange CT-Q 312
Orange AN 308 Media: TROrange308AC2.txt Media: TROrange308AC3.txt Media: TROrange308AC4.txt Media: TROrange308AC5.txt Media: TROrange308AC.xlsx
Yellow
Yellow
Green CB 304 Media: TRGreen304C1.txt Media: TRGreen304C2.txt Media: TRGreen304C7R.txt Media: TRGreen304CB.xlsx Media: TR-304-Alignment.mas Media: TR-304-Tree.pdf
Green CR 304 Media: TRGreen304C11.txt Media: TRGreen304C12.txt Media: TRGreen304C13.txt Media: TRGreen304C14F.txt Media: TRGreen304C15.txt Media: TR_Green_304_C9-C15.xlsx Media: TR-304-Alignment.mas Media: TR-304-Tree.pdf
Blue KT 304 Media: TRBlue304C3.txt Media: TR-304-Alignment.mas Media: TR-304-Tree.pdf
Blue MG 252 N/A
Pink RCB 252 Media: TRPink252C1.txt Media: TRPink252C3.txt Media: TRPink252C5.txt Media: TR252Excel.xlsx
Pink HMH / MG 252 Media: TRPink252C3B.txt Media: TRPink252C4B.txt Media: TRPink252C5B.txt Media: TRPink252C6B.txt



W/F microbiota

Linking a file code: [[Media: filename.extension]] or optionally [[Media: filename.extension | description]].

Team Color Team Member Gull ID Sequence 1 (txt) Sequence 2 (txt) Sequence 3 (txt) Sequence 4 (txt) Sequence 5 (txt) Sequence 6 (txt) Sequence 7 (txt) Sequence 8 (txt) Species overview (xlsx) Alignment (mas) Tree (pdf)
Red
Orange
Orange
Yellow
Yellow
Green
Green
Blue
Blue
Pink
Pink
Purple
Purple
Platinum
Platinum
White
White

T/R microsporidia gels


W/F microsporidia gels


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