Talk:20.109(S13):Phylogenetic analysis (Day7)

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Revision as of 23:59, 5 March 2013

T/R microbiome

Linking a file code: [[Media: filename.extension]] or optionally [[Media: filename.extension | description]].

Team Color Team Member Gull ID Sequence 1 (txt) Sequence 2 (txt) Sequence 3 (txt) Sequence 4 (txt) Sequence 5 (txt) Sequence 6 (txt) Sequence 7 (txt) Sequence 8 (txt) Species overview (xlsx) Alignment (mas) Tree (pdf)
Red Nick 702 Media:TR-Red-C1.txt Media:TR-Red-C2.txt Media:TR-Red-C3.txt Media:TR-Red-C7.txt Media:TR-Red-C8.txt Media:TR-Red-Species.xlsx Media:TR-Blue-Red-705.mas Media:TR-Blue-Red-phylo_tree.pdf
Red
Orange Daphne, Stas 712 Media:TR-Orange_712-C2.txt Media:TR-Orange_712-C5.txt Media:TR-Orange_712-C7.txt Media:TR-Orange_712-C8.txt Media:TR-Orange_712.xlsx Media:TR-712-alignment.mas Media:TR-712-Alignment.pdf
Orange
Yellow Ebaa 664 Media: TR-Yellow_664-C1 Media: TR-Yellow_664-C4 Media: TR-Yellow_664-C8
Yellow Dominique 739 [[Media: filename.extension]] | |[[Media: TR-Yellow_739-C4.txt]] | | |[[Media: TR-Yellow_739-C7.txt]] |[[Media: TR-Yellow_739-C8.txt]] | | | |- |Green |Jesse |405 |[[Media: TR-Green_405-C1.txt]] |[[Media: TR-Green_405-C2.txt]] |[[Media: TR-Green_405-C3.txt]] |[[Media: TR-Green_405-C4.txt]] | |[[Media: TR-Green_405-C6.txt]] |[[Media: TR-Green_405-C7.txt]] | |[[Media: TR-Green-405-Sepecies Overview.xlsx]] |[[Media: TR-405 alignment.mas]] |[[Media: TR-405-PhyloTree.pdf]] |- |Green | | | | | | | | | | | | | |- |Blue | | | | | | | | | | | | | |- |Blue |Noa |702 | | | |[[Media:TR-Blue-702-C4.txt]] |[[Media:TR-Blue-702-C5.txt]] |[[Media:TR-Blue-702-C6.txt]] | |[[Media:TR-Blue-702-C8.txt]] | |[[Media:TR-Blue-702.xlsx]] |[[Media:TR-Blue-Red-phylo_tree.pdf]] |- |Pink |Justin & Arturo |709 | | | | |[[Media:TR-Pink_709-C5B.txt]] |[[Media:TR-Pink_709-C6B.docx]] | | | |[[Media:TR-Pink_709B.xlsx]] | |- |Pink | | | | | | | | | | | | | |- |Purple |Sarah |739 |[[Media:TR-Purple_739-C1.txt]] |[[Media:TR-Purple_739-C2.txt]] |[[Media:TR-Purple_739-C3.txt]] |[[Media:TR-Purple_739-C4.txt]] | | |[[Media:TR-Purple_739-C7.txt]] |[[Media:TR-Purple_739-C8.txt]] |[[Media:S13-M1D7-template-Sarah Yu.xlsx]] |[[Media:module1.mas]] | |- |Purple |Mitali |664 | |[[Media:TR-Purple_664-C2.txt]] | | |[[Media:TR-Purple_664-C5.txt]] | |[[Media:TR-Purple_664-C7.txt]] |[[Media:TR-Purple_664-C8.txt]] |[[Media:TR-Purple_664-MK.xlsx]] |WF NOTE: NOT COMPLETE DO NOT USE [[Media:TR-664-Preliminary Alignment.mas]] | |- |Platinum |Emily |732 | |[[Media:TR_platinum_732_c2.txt]] |[[Media:TR_platinum_732_c3.txt]] |[[Media:TR_platinum_732_c4.txt]] |[[Media:TR_platinum_732_c5.txt]] | | | |[[Media:TR_platinum_732.xlsx]] |[[Media:emily and nikki m5 data.mas]] | |- |Platinum |Katie |405 |[[Media:TR_Platinum_405_c1.txt]] | - |[[Media:TR_Platinum_405_c3.txt]] | - |[[Media:TR_Platinum_405_c5.txt]] |[[Media:TR_Platinum_405_c6.txt]] | - |[[Media:TR_Platinum_405_c8.txt]] |[[Media:KB_TR_Platinum.xlsx]] ||Katie before combining with Jesse: [[Media:KatieJesseSession.mas]], Katie and Jesse (405) Aligned: [[Media: TR-405 alignment.mas]] |Katie and Jesse (405) finished tree - [[Media: TR-405-PhyloTree.pdf]] | |- |} </center> <br style="clear:both;"/> ==W/F microbiome== Linking a file code: <nowiki>[[Media: filename.extension]] or optionally [[Media: filename.extension | description]].

<center>

Team Color Team Member Gull ID Sequence 1 (txt) Sequence 2 (txt) Sequence 3 (txt) Sequence 4 (txt) Sequence 5 (txt) Sequence 6 (txt) Sequence 7 (txt) Sequence 8 (txt) Species overview (xlsx) Alignment (mas) Tree (pdf)
Red
Red
Orange
Orange
Yellow
Yellow
Green
Green
Blue
Blue
Pink
Pink
Purple
Purple
Platinum
Platinum

T/R microsporidia gels

Gel 1
Gel 1
Gel 2, bright
Gel 2, bright
Gel 3
Gel 3
Gel 4
Gel 4

Image:S13-M1D7-TR-Gel2-dim.jpg


W/F microsporidia gels

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