Talk:20.109(S15):Phylogentic analysis (Day8): Difference between revisions

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|Red
|Red
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|[[m‎edia:WFRed040.mas]]
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|Orange
|Orange
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|Platinum
|Platinum
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|[[media:Pt_WF_312.mas]]
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|Blue
|Blue
|58
|58
|[[m‎edia:Janthinobacterium.lividum.TRBlu.Bird-58.15.txt]]
|[[m‎edia:Janthinobacterium.lividum.TRBlu.Bird-58.15.txt |Bird58.C15]]
|[[media:Rugamonas.rubra.TRBlu.Bird-58.9.txt]]
|[[media:Rugamonas.rubra.TRBlu.Bird-58.9.txt]]
|[[media:Janthinobacterium.lividum.TRBlu.Bird-58.11.txt..txt]]
|[[media:Janthinobacterium.lividum.TRBlu.Bird-58.11.txt..txt]]
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|Purple
|Purple
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|62
|http://openwetware.org/images/1/1e/Cupriavidus.basilensis.TRPrp.062.12.txt
|http://openwetware.org/images/1/1e/Cupriavidus.basilensis.TRPrp.062.12.txt
|http://openwetware.org/images/e/ec/Janthinobacterium.lividum.TRPrp.062.1.txt
|http://openwetware.org/images/e/ec/Janthinobacterium.lividum.TRPrp.062.1.txt
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|[[Media:Halomonas.rifensis.WFRed.040.1.txt|040_C1]]
|[[Media:Halomonas.rifensis.WFRed.040.1.txt|040_C1]]
|[[Media:Janthinobacterium.lividium.WFRed.040.2.txt|040_C2]]
|[[Media:Janthinobacterium.lividium.WFRed.040.2.txt|040_C2]]
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|[[Media:Janthinobacterium.lividium.WFRed.040.3.txt|040_C3]]
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|[[Media:Shewanella.haliotis.WFRed.040.4.txt|040_C4]]
|[[Media:Janthinobacterium.lividium.WFRed.040.5.txt|040_C5]]
|[[Media:Janthinobacterium.lividium.WFRed.040.5.txt|040_C5]]
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|[[Media:Raoultella.ornithinolytica.WFRed.040.11.txt|040_C11]]
|[[Media:Pseudomonas_extremaustralis.WFRed.040.12.txt|040_C12]]
|[[Media:Pseudomonas_extremaustralis.WFRed.040.12.txt|040_C12]]
|[[Media:Halomonas.rifensis.WFRed.040.13.txt|040_C13]]
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|[[Media:WFRed040.xlsx|040_species sheet]]
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|[[Media:Pseudomonas.fluorescens.WFYel.Bird274.19.txt|274_C19]]
|[[Media:Pseudomonas.fluorescens.WFYel.Bird274.19.txt|274_C19]]
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|[[Media:WFOrangeSpeciesTemplate.xlsx|040/274 species sheet]]
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|Yellow
|Yellow
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|Green
|Green
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|[http://openwetware.org/images/3/3a/050_6.txt 050_C6]
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|[[Media:274_C4.txt|274_C4]]
|[[Media:274_C4.txt|274_C4]]
|[[Media:WFBlue274C3S15.txt|274_C3]]
|[[Media:WFBlue274C3S15.txt|274_C3]]
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|[[Media:WFBlue274_C6.txt|274_C6]]
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|[[Media:Klebsiella.oxytoca.WFPnk.290F1.txt‎|290_F1]]
|[[Media:Klebsiella.oxytoca.WFPnk.290F1.txt‎|290_F1]]
|[[Media:Pseudomonas.poae.WFPnk.290F2.txt|290_F2]]
|[[Media:Pseudomonas.poae.WFPnk.290F2.txt|290_F2]]
|[[Media:Pseudomonas.graminis.WFPnk.290F3.txt‎|290_F3]]
|[[Media:Pseudomonas.libanensis.WFPnk.290F4.txt|290_F4]]
|[[Media:Klebsiella.oxytoca.WFPnk.290F5.txt‎|290_F5]]
|[[Media:Pseudomonas.fluorescens.WFPnk.290C6.txt‎|290_C6]]
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|[[Media:WFPink290.xlsx‎|290]]
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|Purple
|Purple
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|040/274
|[[Media:WFPurple040C6.txt]]
|[[Media:WFPurple040C6.txt]]
|[[Media:WFPurple040C7.txt]]
|[[Media:WFPurple040C7.txt]]
|[[Media:WFPurple040C9.txt]]
|[[Media:WFPurple040C9.txt]]
|[[Media:WFPurple040C10.txt]]
|[[Media:WFPurple040C10.txt]]
|[[Media:WFPurple274FP7.txt]]
|[[Media:WFPurple274FP11.txt]]
|[[Media:WFPurple274FP12.txt]]
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|[[Media:WFPurple_BLAST.xlsx]]
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|Platinum
|Platinum
|312
|312
|[[Media:312_C1_WFPt.txt|312_C1]]
|[[Media:Enterobacter.aerogenes.WFPt.312.1.txt|312_C1]]
|[[Media:312_C5_WFPt.txt|312_C5]]
|[[Media:Pseudomonas.azotoformans.WFPt.312.5.txt|312_C5]]
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|[[Media:Klebsiella.oxytoca.WFPt.312.7.txt|312_C7]]
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|[[Media:Pseudomonas.extremaustralis.WFPt.312.2.txt|312_C2]]
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|[[Media:Pseudomonas.extremaustralis.WFPt.312.10.txt|312_C10]]
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|[[Media:Pseudomonas.libanensis.WFPt.312.9.txt|312_C9]]
|[[Media:Klebsiella.oxytoca.WFPt.312.11.txt|312_C11]]
|[[Media:Klebsiella.oxytoca.WFPt.312.11.txt|312_C11]]
|[[Media:Pseudomonas.libanensis.WFPt.312.12.txt|312_C12]]
|[[Media:Pseudomonas.libanensis.WFPt.312.12.txt|312_C12]]
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|[[Media:WFPt312.xlsx|312_All]]
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|}
</center>
</center>

Revision as of 14:52, 6 March 2015

Upload alignment files here

Name your alignment file according to this example: WF-TeamColor-alignment-FINAL

T/R Groups Final MEGA File (upload .mas file)
Orange
Yellow
Green
Blue
Purple


W/F Groups Final MEGA File (upload .mas file)
Red m‎edia:WFRed040.mas
Orange
Yellow
Green
Blue
Pink
Purple
Platinum media:Pt_WF_312.mas

Upload sequence files here

T/R Team Color Gull ID Sequence 1 (txt) Sequence 2 (txt) Sequence 3 (txt) Sequence 4 (txt) Sequence 5 (txt) Sequence 6 (txt) Sequence 7 (txt) Sequence 8 (txt) Sequence 9 (txt) Species overview (xlsx)
Orange 302 http://openwetware.org/images/e/eb/Janthinobacterium.lividum.TROrg.302.16.txt http://openwetware.org/wiki/Image:Janthinobacterium.marseille.TROrg.Bird302.6.txt http://openwetware.org/wiki/Image:Janthinobacterium.marseille.TROrg.Bird302.4.txt http://openwetware.org/wiki/Image:Janthinobacterium.marseille.TROrg.Bird302.14.txt http://openwetware.org/images/7/7c/Cupriavidus.basilensis.TROrg.302.13.txt http://openwetware.org/images/c/c0/Janthinobacterium.lividum.TROrg.302.15.txt http://openwetware.org/images/1/16/Janthinobacterium.lividum.TROrg.302.11.txt http://openwetware.org/images/0/04/Janthinobacterium.lividum.TROrg.302.7.txt http://openwetware.org/wiki/Image:Pseudomonas.fluorescens.TROrg.Bird302.8.txt http://openwetware.org/wiki/Image:TROrange302.xlsx
Yellow
Green 50 http://openwetware.org/images/e/e1/Pseudomonas.extremaustralis.TRGrn.bird50.5.txt http://openwetware.org/images/1/11/Janthinobacterium.lividum.TRGrn.bird50.8.txt http://openwetware.org/images/4/4b/Janthinobacterium.lividum.TRGrn.Bird50.9.txt http://openwetware.org/images/c/ce/Pseudomonas.flourescens.TRGren.Bird50.10.txt
Blue 58 Bird58.C15 media:Rugamonas.rubra.TRBlu.Bird-58.9.txt media:Janthinobacterium.lividum.TRBlu.Bird-58.11.txt..txt media:Janthinobacterium.lividum.TRBlu.Bird-.58.13.txt media:Janthinobacterium.lividum.TRBlu58.16.txt media:TRBlu58.xlsx
Purple 62 http://openwetware.org/images/1/1e/Cupriavidus.basilensis.TRPrp.062.12.txt http://openwetware.org/images/e/ec/Janthinobacterium.lividum.TRPrp.062.1.txt http://openwetware.org/images/4/45/Janthinobacterium.lividum.TRPrp.062.9.txt http://openwetware.org/images/2/21/Janthinobacterium.lividum.TRPrp.062.15.txt http://openwetware.org/images/5/5e/Janthinobacterium.lividum.TRPrp.062.18.txt http://openwetware.org/images/1/15/Janthinobacterium.lividum.TRPrp.062.14.txt http://openwetware.org/images/d/d0/20.109%28s15%29_062.xlsx


W/F Team Color Gull ID Sequence 1 (txt) Sequence 2 (txt) Sequence 3 (txt) Sequence 4 (txt) Sequence 5 (txt) Sequence 6 (txt) Sequence 7 (txt) Sequence 8 (txt) Sequence 9 (txt) Species overview (xlsx)
Red 040_C1 040_C2 040_C3 040_C4 040_C5 040_C11 040_C12 040_C13 040_species sheet
Orange 040/274 040_C18 040_C15 040_C17 040_C19 274_C16 274_C18 274_C20 274_C19 040/274 species sheet
Yellow
Green 050_C6
Blue 058/274 058_C19 058_C17 058_C20 274_C1 274_C2 274_C4 274_C3 274_C6
Pink 290 290_F1 290_F2 290_F3 290_F4 290_F5 290_C6 290
Purple 040/274 Media:WFPurple040C6.txt Media:WFPurple040C7.txt Media:WFPurple040C9.txt Media:WFPurple040C10.txt Media:WFPurple274FP7.txt Media:WFPurple274FP11.txt Media:WFPurple274FP12.txt Media:WFPurple_BLAST.xlsx
Platinum 312 312_C1 312_C5 312_C7 312_C2 312_C10 312_C9 312_C11 312_C12 312_All
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