Talk:20.109(S15):AIV detection assay and analysis (Day7): Difference between revisions
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==AIV detection assay results== | |||
===WF section=== | |||
[[Media:WF QPCR plate map.docx| WF Plate Map]] | |||
[[Media:20109 S15 WF Ct values ROYG.xls | Ct values for Red, Orange, Yellow, and Green Team]] | |||
[[Media:20109 S15 WF Ct values BPiPuPl.txt | Ct values for Blue, Pink, Purple, and Platinum Team]] | |||
<center> | |||
{| border="1" | |||
! Team | |||
! Amplification curve image | |||
! Melting curve image | |||
|- | |||
|Red | |||
|[[Media:WFredteam.jpg| Red Team Ct curve]] | |||
|[[Media:WFredteamMC.jpg| Red Team Melting curve]] | |||
|- | |||
|Orange | |||
|[[Media:WForangeteam.jpg| Orange Team Ct curve]] | |||
|[[Media:WForangeteamMC.jpg| Orange Team Melting curve]] | |||
|- | |||
|Yellow | |||
|[[Media:WFyellowteam.jpg| Yellow Team Ct curve]] | |||
|[[Media:WFyellowteamMC.jpg| Yellow Team Melting curve]] | |||
|- | |||
|Green | |||
|[[Media:WFgreenteam.jpg| Green Team Ct curve]] | |||
|[[Media:WFgreenteamMC.jpg| Green Team Melting curve]] | |||
|- | |||
|Blue | |||
|[[Media:WFblueteam.jpg| Blue Team Ct curve]] | |||
|[[Media:WFblueteamMC.jpg| Blue Team Melting curve]] | |||
|- | |||
|Pink | |||
|[[Media:WFpinkteam.jpg| Pink Team Ct curve]] | |||
|[[Media:WFpinkteamMC.jpg| Pink Team Melting curve]] | |||
|- | |||
|Purple | |||
|[[Media:WFpurpleteam.jpg| Purple Team Ct curve]] | |||
|[[Media:WFpurpleteamMC.jpg| Purple Team Melting curve]] | |||
|- | |||
|Platinum | |||
|[[Media:WFplatinumteam.jpg| Platinum Team Ct curve]] | |||
|[[Media:WFplatinumteamMC.jpg| Platinum Team Melting curve]] | |||
|- | |||
|} | |||
</center> | |||
==Upload phylogenetic data here== | |||
<center> | <center> | ||
{| border="1" | {| border="1" | ||
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|- | |- | ||
|Orange | |Orange | ||
| | | | ||
| | | | ||
| | | | ||
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<center> | <center> | ||
{| border="1" | {| border="1" | ||
! | ! W/F Team Color | ||
! Team Member | ! Team Member | ||
! Sequence (txt) | ! Sequence (txt) | ||
| Line 106: | Line 159: | ||
|- | |- | ||
|Orange | |Orange | ||
|Katherine | |||
|[[Media:SequenceKatherine.png]] | |||
|[[Media:SpeciesKatherine.xlsx]] | |||
| | | | ||
| | |[[Media:TreeKatherine.pdf]] | ||
|- | |- | ||
|Orange | |Orange | ||
| Line 120: | Line 173: | ||
|- | |- | ||
|Yellow | |Yellow | ||
| | |Hannah | ||
| | |[[Media:HZJH3415YELLOW.txt |Sequence]] | ||
| | |[[Media:HZJH-Yellow-WF109-BLASTPRACTICE.xlsx|Species Overview]] | ||
| | |[[Media:S15_data_mega.mas|Alignment]] | ||
| | |[[Media:S15_image_p.pdf|Tree]] | ||
|- | |- | ||
|Yellow | |Yellow | ||
| Line 134: | Line 187: | ||
|- | |- | ||
|Green | |Green | ||
| | |Cortni | ||
| | |[http://openwetware.org/images/0/00/WFGreenM1D7test.pdf Sequence] | ||
| | |[http://openwetware.org/images/1/17/WFGreenM1D7test.xlsx Species Overview] | ||
| | |[http://openwetware.org/images/5/5d/S14_data.mas Alignment] | ||
| | |[http://openwetware.org/images/7/76/S14data.pdf Tree] | ||
|- | |- | ||
|Green | |Green | ||
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|- | |- | ||
|Blue | |Blue | ||
| | |Anastassia | ||
| | |[[Media:Sequence_Anastassia.txt|Sequence]] <br> [[Media:S14_IDfile_spaces_AnastassiaWFBlue.txt|ID file]] | ||
| | |[[Media:S15-M1D7-WFBluePink1-Anastassia.xlsx|Species Overview]] | ||
| | |[[Media:S14_dataalignment_AnastassiaWFBlue.mas|Alignment]] | ||
| | |[[Media:S14_datatree_AnastassiaWFBlue.pdf|Tree]] | ||
|- | |- | ||
|Blue | |Blue | ||
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|- | |- | ||
|Purple | |Purple | ||
| | |Marissa | ||
| | |[[Media:WFPurpleSP14Seq.txt]] | ||
| | |[[Media:S14-M1D7-Purple-MKG-AL.xlsx]] | ||
| | |[[Media:Purple_S14_data.mas]] | ||
| | |[[Media:Purple_S14_Tree.pdf]] | ||
|- | |- | ||
|Purple | |Purple | ||
| Line 190: | Line 243: | ||
|- | |- | ||
|Platinum | |Platinum | ||
| | |Will | ||
| | |[[Media:WillSequence.txt]] | ||
| | |[[Media:Will_White_WF_312.xlsx]] | ||
| | |[[Media:Will_S14.mas]] | ||
| | |[[Media:Will_Tree.pdf]] | ||
|- | |- | ||
|Platinum | |Platinum | ||
Latest revision as of 07:23, 12 March 2015
AIV detection assay results
WF section
Ct values for Red, Orange, Yellow, and Green Team
Ct values for Blue, Pink, Purple, and Platinum Team
| Team | Amplification curve image | Melting curve image |
|---|---|---|
| Red | Red Team Ct curve | Red Team Melting curve |
| Orange | Orange Team Ct curve | Orange Team Melting curve |
| Yellow | Yellow Team Ct curve | Yellow Team Melting curve |
| Green | Green Team Ct curve | Green Team Melting curve |
| Blue | Blue Team Ct curve | Blue Team Melting curve |
| Pink | Pink Team Ct curve | Pink Team Melting curve |
| Purple | Purple Team Ct curve | Purple Team Melting curve |
| Platinum | Platinum Team Ct curve | Platinum Team Melting curve |
Upload phylogenetic data here
| T/R Team Color | Team Member | Sequence (txt) | Species overview (xlsx) | Alignment (mas) | Tree (pdf) |
|---|---|---|---|---|---|
| Orange | |||||
| Orange | |||||
| Yellow | |||||
| Yellow | |||||
| Green | |||||
| Green | |||||
| Blue | |||||
| Blue | |||||
| Purple | |||||
| Purple |
| W/F Team Color | Team Member | Sequence (txt) | Species overview (xlsx) | Alignment (mas) | Tree (pdf) |
|---|---|---|---|---|---|
| Red | |||||
| Red | |||||
| Orange | Katherine | Media:SequenceKatherine.png | Media:SpeciesKatherine.xlsx | Media:TreeKatherine.pdf | |
| Orange | |||||
| Yellow | Hannah | Sequence | Species Overview | Alignment | Tree |
| Yellow | |||||
| Green | Cortni | Sequence | Species Overview | Alignment | Tree |
| Green | |||||
| Blue | Anastassia | Sequence ID file |
Species Overview | Alignment | Tree |
| Blue | |||||
| Pink | |||||
| Pink | |||||
| Purple | Marissa | Media:WFPurpleSP14Seq.txt | Media:S14-M1D7-Purple-MKG-AL.xlsx | Media:Purple_S14_data.mas | Media:Purple_S14_Tree.pdf |
| Purple | |||||
| Platinum | Will | Media:WillSequence.txt | Media:Will_White_WF_312.xlsx | Media:Will_S14.mas | Media:Will_Tree.pdf |
| Platinum | |||||
| Platinum |
