Talk:20.109(S14):Phylogenetic and primer analyses (Day7): Difference between revisions
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| | |[[Media: TRGreen304C1.txt]] | ||
| | |[[Media: TRGreen304C2.txt]] | ||
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|[[Media: TRGreen304C7R.txt]] | |[[Media: TRGreen304C7R.txt]] | ||
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| | |[[Media: TRGreen304CB.xlsx]] | ||
|[[Media: TR-304-Alignment.mas]] | |[[Media: TR-304-Alignment.mas]] | ||
|[[Media: TR-304-Tree.pdf]] | |[[Media: TR-304-Tree.pdf]] |
Revision as of 15:12, 4 March 2014
General notes and updates
Final sample-wide alignment files and trees
One representative from each sample-based group should post a .mas and .pdf file here when data are in final form. That way we'll all have quick access to the location sub-trees.
Sample # | Alignment file (.mas) | Tree file (.pdf) |
304 | Media: TR-304-Alignment.mas | Media: TR-304-Tree.pdf |
T/R microbiota
Linking a file code: [[Media: filename.extension]] or optionally [[Media: filename.extension | description]].
Team Color | Team Member | Gull ID | Sequence 1 (txt) | Sequence 2 (txt) | Sequence 3 (txt) | Sequence 4 (txt) | Sequence 5 (txt) | Sequence 6 (txt) | Sequence 7 (txt) | Sequence 8 (txt) | Species overview (xlsx) | Alignment (mas) | Tree (pdf) |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Red | |||||||||||||
Red | |||||||||||||
Orange | CT-Q | 312 | |||||||||||
Orange | |||||||||||||
Yellow | |||||||||||||
Yellow | |||||||||||||
Green | CB | 304 | Media: TRGreen304C1.txt | Media: TRGreen304C2.txt | Media: TRGreen304C7R.txt | Media: TRGreen304CB.xlsx | Media: TR-304-Alignment.mas | Media: TR-304-Tree.pdf | |||||
Green | CR | 304 | Media: TRGreen304C11.txt | Media: TRGreen304C12.txt | Media: TRGreen304C13.txt | Media: TRGreen304C14F.txt | Media: TRGreen304C15.txt | Media: TR_Green_304_C9-C15.xlsx | Media: TR-304-Alignment.mas | Media: TR-304-Tree.pdf | |||
Blue | KT | 304 | Media: TRBlue304C3.txt | Media: TR-304-Alignment.mas | Media: TR-304-Tree.pdf | ||||||||
Blue | |||||||||||||
Pink | RCB | 252 | Media: TRPink252C1.txt | Media: TRPink252C3.txt | Media: TRPink252C5.txt | Media: TR252Excel.xlsx | |||||||
Pink | HMH | 252 | Media: TRPink252C3B.txt | Media: TRPink252C4B.txt | |||||||||
W/F microbiome
Linking a file code: [[Media: filename.extension]] or optionally [[Media: filename.extension | description]].
T/R microsporidia gels
W/F microsporidia gels