Talk:20.109(S14):Phylogenetic and primer analyses (Day7): Difference between revisions
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|F | |F | ||
|Carson Beach | |Carson Beach | ||
| | |[[Media: WF-290-alignment-FINAL.mas]] | ||
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|274 | |274 | ||
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|M | |M | ||
|Carson Beach | |Carson Beach | ||
| | |[[Media: WF-274-alignment_FINAL.mas]] | ||
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|286 | |286 | ||
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|M | |M | ||
|Carson Beach | |Carson Beach | ||
| | |[[Media: WF-286-alignment-FINAL.mas]] | ||
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|294 | |294 | ||
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|M | |M | ||
|Carson Beach | |Carson Beach | ||
| | |[[Media: WF-294-Alignment-FINAL.mas]] | ||
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|304 | |304 | ||
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|M | |M | ||
|South Bay Center | |South Bay Center | ||
|[[Media: TR-304-Alignment- | |[[Media: TR-304-Alignment-FINAL.mas]] | ||
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|252 | |252 | ||
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|M | |M | ||
|South Bay Center | |South Bay Center | ||
| | |[[Media: WF260alignment-final2.mas]] | ||
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|} | |} | ||
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|[[Media:TRRed308C8.txt]] | |[[Media:TRRed308C8.txt]] | ||
|[[Media:TRRed_308_final.xls]] | |[[Media:TRRed_308_final.xls]] | ||
| | |See below row | ||
| | |See below row | ||
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|Red | |Red | ||
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|[[Media:TRRed308C8B.txt]] | |[[Media:TRRed308C8B.txt]] | ||
|[[Media:TRRed_308_final.xls]] | |[[Media:TRRed_308_final.xls]] | ||
| | |See below row | ||
| | |See below row | ||
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|All | |All | ||
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|[[Media: TRGreen304CB.xlsx]] | |[[Media: TRGreen304CB.xlsx]] | ||
|[[Media: TR-304-Alignment- | |[[Media: TR-304-Alignment-FINAL.mas]] | ||
|[[Media: TR-304-Tree-Final.pdf]] | |[[Media: TR-304-Tree-Final.pdf]] | ||
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|[[Media: TRGreen304C15.txt]] | |[[Media: TRGreen304C15.txt]] | ||
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|[[Media: TRGreen304CR- | |[[Media: TRGreen304CR-FINAL.xlsx]] | ||
|[[Media: TR-304-Alignment-Final.mas]] | |[[Media: TR-304-Alignment-Final.mas]] | ||
|[[Media: TR-304-Tree-Final.pdf]] | |[[Media: TR-304-Tree-Final.pdf]] | ||
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| | |[[Media: TRBlueKT.xlsx]] | ||
|[[Media: TR-304-Alignment- | |[[Media: TR-304-Alignment-FINAL.mas]] | ||
|[[Media: TR-304-Tree-Final.pdf]] | |[[Media: TR-304-Tree-Final.pdf]] | ||
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|[[Media:WFRed286_2.xlsx]] | |[[Media:WFRed286_2.xlsx]] | ||
|[[Media:WF-286-alignment-partial.mas]] | |[[Media:WF-286-alignment-partial.mas]] | ||
|[[Media:WF-286-Tree- | |[[Media:WF-286-Tree-final.pdf]] | ||
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|[[Media: WFYellow294(1).xlsx]] | |[[Media: WFYellow294(1).xlsx]] | ||
|[[Media: WF-294-Alignment.mas]] | |[[Media: WF-294-Alignment.mas]] | ||
| | |[[Media: WF-294-Tree-FINAL.pdf]] | ||
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|Yellow | |Yellow | ||
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| | |[[Media: WFGreen209C7.txt]] | ||
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|[[Media: WFGreen290.xlsx]] | |[[Media: WFGreen290.xlsx]] | ||
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|[[Media: WFGreen290C3B.txt]] | |||
|[[Media: WFGreen290C4B.txt]] | |||
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| | |[[Media: WFGreen290C7B.txt]] | ||
|[[Media: WFGreen290C8B.txt]] | |||
|[[Media: WFGreen290B.xlsx]] | |||
|[[Media: | |[[Media:WF-290-alignment.mas]] | ||
|[[Media: | |[[Media:WF-290-Tree.pdf]] | ||
|[[Media:WF-290-alignment | |||
|[[Media:WF-290-Tree | |||
|- | |- | ||
|Blue | |Blue | ||
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|[[Media:WFWhite260C1.txt]] | |[[Media:WFWhite260C1.txt]] | ||
|short sequence | |short sequence | ||
| | |no priming | ||
| | |short sequence | ||
| | |no priming | ||
|[[Media:WFWhite260C6.txt]] | |[[Media:WFWhite260C6.txt]] | ||
|[[Media:WFWhite260C7.txt]] | |[[Media:WFWhite260C7.txt]] | ||
|[[Media: WFWhite260C8.txt]] | |[[Media: WFWhite260C8.txt]] | ||
|[[Media | |[[Media: WFWhite260.xlsx]] | ||
|[[Media: WF260alignment-partial.mas]] | |[[Media: WF260alignment-partial.mas]] | ||
|[[Media: WF260Tree-partial.pdf]] | |[[Media: WF260Tree-partial.pdf]] | ||
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| | |[[Media:WFWhite260C12.txt]] | ||
| | |[[Media:WFWhite260C13.txt]] | ||
|[[Media:WFWhite260C14.txt]] | |[[Media:WFWhite260C14.txt]] | ||
| | | | ||
| | | | ||
|[[Media:WFwhite260.xlsx]] | |[[Media:WFwhite260.xlsx]] | ||
| | |[[Media:WF260alignment-final2.mas]] | ||
| | |[[Media:WF260TreeFinal2.pdf]] | ||
|- | |- | ||
|} | |} |
Latest revision as of 11:22, 9 March 2014
General notes and updates
Sample # | Species | Sex | Location | Final MEGA File |
308 | RBG | F | Carson Beach | Media: TR-308-alignment-FINAL.mas |
312 | RBG | F | Carson Beach | Media: TR-312-alignment_FINAL.mas |
290 | RBG | F | Carson Beach | Media: WF-290-alignment-FINAL.mas |
274 | RBG | M | Carson Beach | Media: WF-274-alignment_FINAL.mas |
286 | RBG | M | Carson Beach | Media: WF-286-alignment-FINAL.mas |
294 | RBG | M | Carson Beach | Media: WF-294-Alignment-FINAL.mas |
304 | HG | M | South Bay Center | Media: TR-304-Alignment-FINAL.mas |
252 | HG | M | South Bay Center | Media: TR-252-Alignment_finalv1.mas |
260 | HG | M | South Bay Center | Media: WF260alignment-final2.mas |
T/R microbiota
Linking a file code: [[Media: filename.extension]] or optionally [[Media: filename.extension | description]].
W/F microbiota
Linking a file code: [[Media: filename.extension]] or optionally [[Media: filename.extension | description]].
T/R microsporidia gels
Gel number | Reference samples | Group 1 | Group 2 | Picture |
---|---|---|---|---|
T/R 1 | Specificity (VC, EH, mixture) | Orange | Yellow | Media:TR1.BMP |
T/R 2 | Specificity (VC, EH, mixture) | Blue | W/F Green | Media:TR2.BMP |
T/R 3 | Sensitivity (EH: lo, mid, hi) | Red | Green | Media:TR3.BMP |
T/R 4 | Sensitivity (EH: lo, mid, hi) | Pink | Blue | Media:TR4.BMP |
W/F microsporidia gels
Gel number | Reference samples | Group 1 | Group 2 | Picture |
---|---|---|---|---|
W/F 1 | Specificity (VC, EH, mixture) | Blue | Purple | Media:WF1.BMP |
W/F 2 | Specificity (VC, EH, mixture) | Silver | White | Media:WF2.BMP |
W/F 3 | Sensitivity (EH: lo, mid, hi) | Red | Orange | Media:WF3.BMP |
W/F 4 | Sensitivity (EH: lo, mid, hi) | Yellow | Pink | Media:WF4.BMP |