T7 Feature Conservation

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Conserved genomic features across T7 and close relatives

The table below shows conservation data for genes, promoters and RNAse III sites, across 5 genomes: T7, T3, gh-1, φYeO3-12 and φA1122.

Genomes
Genes
gene=0.3 T7 phiYe03-12 T3 phiA1122 ------
gene=0.3b ------ ------ T3 ------ ------
gene=0.4 T7 ------ ------ ------ ------
gene=0.45 ------ phiYe03-12 ------ ------ ------
gene=0.5 T7 ------ ------ ------ ------
gene=0.6 ------ ------ T3 ------ ------
gene=0.65 ------ ------ T3 ------ ------
gene=0.6a T7 phiYe03-12 ------ ------ ------
gene=0.6b T7 phiYe03-12 ------ ------ ------
gene=0.7 T7 phiYe03-12 T3 phiA1122 ------
gene=1 T7 phiYe03-12 T3 phiA1122 gh-1
gene=1.05 ------ phiYe03-12 T3 ------ ------
gene=1.1 T7 phiYe03-12 T3 phiA1122 gh-1
gene=orf1 ------ ------ ------ ------ gh-1
gene=orf2 ------ ------ ------ ------ gh-1
gene=1.2 T7 phiYe03-12 T3 phiA1122 ------
gene=1.3 T7 phiYe03-12 T3 phiA1122 gh-1
gene=orf3A ------ ------ ------ ------ gh-1
gene=orf3B ------ ------ ------ ------ gh-1
gene=1.4 T7 ------ ------ ------ ------
gene=1.45 ------ phiYe03-12 ------ ------ ------
gene=1.5 T7 phiYe03-12 T3 phiA1122 ------
gene=1.6 T7 phiYe03-12 T3 phiA1122 ------
gene=1.7 T7 phiYe03-12 T3 phiA1122 ------
gene=1.75 ------ ------ ------ phiA1122 ------
gene=1.8 T7 phiYe03-12 T3 phiA1122 ------
gene=1.9 ------ ------ T3 ------ ------
gene=1.95 ------ ------ T3 ------ ------
gene=2 T7 phiYe03-12 T3 phiA1122 gh-1
gene=orf4 gh-1
gene=2.5 T7 phiYe03-12 T3 phiA1122 gh-1
gene=2.8 T7 ------ ------ ------ ------
gene=3 T7 phiYe03-12 T3 phiA1122 gh-1
gene=3.3 ------ ------ ------ phiA1122 ------
gene=3.5 T7 phiYe03-12 T3 phiA1122 gh-1
gene=orf5 ------ ------ ------ ------ gh-1
gene=3.7 ------ phiYe03-12 T3 ------ ------
gene=3.8 T7 ------ ------ phiA1122 gh-1
gene=4 ------ ------ T3 ------ gh-1
gene=orf6 ------ ------ ------ ------ gh-1
gene=orf7 ------ ------ ------ ------ gh-1
gene=4.1 T7 ------ ------ ------ ------
gene=4.15 ------ phiYe03-12 ------ ------ ------
gene=4.2 T7 phiYe03-12 T3 ------ ------
gene=4.3 T7 phiYe03-12 T3 phiA1122 ------
gene=4.5 T7 phiYe03-12 T3 phiA1122 ------
gene=4.7 T7 ------ ------ phiA1122 ------
gene=4a T7 phiYe03-12 T3 phiA1122 ------
gene=4b T7 phiYe03-12 T3 phiA1122 ------
gene=5 T7 phiYe03-12 T3 phiA1122 gh-1
gene=orf8 ------ ------ ------ ------ gh-1
gene=5.1 ------ ------ T3 ------ ------
gene=5.3 T7 phiYe03-12 T3 ------ ------
gene=5.5 T7 phiYe03-12 T3 phiA1122 ------
gene=5.5-5.7 T7 phiYe03-12 ------ ------ ------
gene=5.7 T7 phiYe03-12 T3 phiA1122 gh-1
gene=5.9 T7 phiYe03-12 T3 phiA1122 ------
gene=5b ------ phiYe03-12 T3 ------ ------
gene=6 T7 phiYe03-12 T3 phiA1122 gh-1
gene=6.1 ------ phiYe03-12 ------ ------ ------
gene=6.3 T7 phiYe03-12 T3 phiA1122 ------
gene=6.5 T7 phiYe03-12 T3 phiA1122 gh-1
gene=6.7 T7 phiYe03-12 T3 phiA1122 gh-1
gene=7 T7 ------ ------ phiA1122 gh-1
gene=7.3 T7 phiYe03-12 T3 phiA1122 gh-1
gene=7.7 T7 ------ ------ phiA1122 ------
gene=8 T7 phiYe03-12 T3 phiA1122 gh-1
gene=9 T7 phiYe03-12 T3 phiA1122 gh-1
gene=10a T7 phiYe03-12 T3 phiA1122 gh-1
gene=10b T7 phiYe03-12 T3 ------ ------
gene=11 T7 phiYe03-12 T3 phiA1122 gh-1
gene=12 T7 phiYe03-12 T3 phiA1122 gh-1
gene=13 T7 phiYe03-12 T3 phiA1122 gh-1
gene=13.5 ------ phiYe03-12 ------ ------ ------
gene=14 T7 phiYe03-12 T3 phiA1122 gh-1
gene=15 T7 phiYe03-12 T3 phiA1122 gh-1
gene=16 T7 phiYe03-12 T3 phiA1122 gh-1
gene=17 T7 phiYe03-12 T3 phiA1122 gh 
gene=orf9 ------ ------ ------ ------ gh-1
gene=17.5 T7 phiYe03-12 T3 phiA1122 ------
gene=18 T7 phiYe03-12 T3 phiA1122 gh-1
gene=18.5 T7 phiYe03-12 T3 phiA1122 gh-1
gene=18.7 T7 phiYe03-12 T3 phiA1122 gh-1
gene=19 T7 phiYe03-12 T3 phiA1122 gh-1
gene=orf10 ------ ------ ------ ------ gh-1
gene=orf11 ------ ------ ------ ------ gh-1
gene=19.2 T7 phiYe03-12 T3 phiA1122 ------
gene=19.3 T7 phiYe03-12 T3 phiA1122 ------
gene=19.5 T7 phiYe03-12 T3 phiA1122 ------
Promoters
promoter=A0 T7 phiYe03-12 T3 phiA1122 ------
promoter=A1 T7 phiYe03-12 T3 phiA1122 gh-1
promoter=A2 T7 phiYe03-12 T3 phiA1122 gh-1
promoter=A3 T7 phiYe03-12 T3 phiA1122 ------
promoter=B T7 ------ T3 ------ ------
promoter=C T7 ------ T3 phiA1122 ------
promoter=phi1 ------ ------ ------ ------ gh-1
promoter=phiorf3A ------ ------ ------ ------ gh-1
promoter=phi1.05 ------ phiYe03-12 T3 ------ ------
promoter=phi1.1 ------ phiYe03-12 T3 ------ ------
promoter=phi1.1a T7 ------ ------ phiA1122 ------
promoter=phi1.1b T7 ------ ------ phiA1122 ------
promoter=phi1.3 T7 phiYe03-12 T3 phiA1122 ------
promoter=phi1.5 T7 phiYe03-12 T3 phiA1122 ------
promoter=phi1.6 T7 ------ ------ phiA1122 ------
promoter=phi2.5 T7 phiYe03-12 T3 phiA1122 gh-1
promoter=phi3.8 T7 phiYe03-12 T3 phiA1122 ------
promoter=phi4.3 T7 phiYe03-12 T3 phiA1122 ------
promoter=phi4.7 T7 ------ ------ phiA1122 ------
promoter=phi4c T7 ------ ------ phiA1122 ------
promoter=phi5 ------ ------ ------ ------ gh-1
promoter=phi6.5 T7 phiYe03-12 T3 phiA1122 gh-1
promoter=phi9 T7 phiYe03-12 T3 phiA1122 gh-1
promoter=phi10 T7 phiYe03-12 T3 phiA1122 gh-1
promoter=phi11 ------ phiYe03-12 T3 ------ ------
promoter=phi13 T7 phiYe03-12 T3 phiA1122 gh-1
promoter=phi17 T7 phiYe03-12 ------ phiA1122 gh-1
promoter=phiorf10 ------ ------ ------ ------ gh-1
promoter=phiOL T7 phiYe03-12 T3 phiA1122 ------
promoter=phiOR T7 phiYe03-12 T3 ------ ------
Rnase III sites
RNAseIII=r0.3 T7 phiYe03-12 T3 phiA1122 ------
RNAseIII=r0.45 ------ phiYe03-12 ------ ------ ------
RNAseIII=r0.5 T7 ------ T3 ------ ------
RNAseIII=r1 T7 phiYe03-12 T3 phiA1122 gh-1
RNAseIII=r1.1 T7 phiYe03-12 T3 phiA1122 ------
RNAseIII=r1.3 T7 phiYe03-12 T3 phiA1122 ------
RNAseIII=r3.8 T7 phiYe03-12 T3 phiA1122 ------
RNAseIII=r4.7 T7 phiYe03-12 T3 phiA1122 ------
RNAseIII=r6.5 T7 phiYe03-12 T3 phiA1122 ------
RNAseIII=r13 T7 phiYe03-12 T3 phiA1122 ------
RNAseIII=r18.5 T7 phiYe03-12 T3 phiA1122 ------
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