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[[Sysbio:Back Door | <font face="trebuchet ms" style="color:#bcd5bc"> '''Internal''' </font>]] | [[Sysbio:Back Door | <font face="trebuchet ms" style="color:#bcd5bc"> '''Internal''' </font>]] | ||
[[Sysbio:Notebook/SysBio_notebook | <font face="trebuchet ms" style="color:#bcd5bc"> '''Lab Notebook''' </font>]] | [[Sysbio:Notebook/SysBio_notebook | <font face="trebuchet ms" style="color:#bcd5bc"> '''Lab Notebook''' </font>]] | ||
[ | [https://plus.google.com/105324148007206298526/posts <font face="trebuchet ms" style="color:#bcd5bc"> '''Lab Blog''' </font>] | ||
</center> | </center> | ||
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==Publications== | ==Publications== | ||
'''2015''' | |||
* R. Guantes, S. Arganda and G. G. de Polavieja, ''Biophysics of Adaptation in a Computational Model of the Leech T Neuron'', in Jaeger D, Jung R (Eds.) Encyclopedia of Computational Neuroscience (2015). | |||
* V. Doldán-Martelli, D. G. Míguez, ''[http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0117558 Synergistic Interaction between Selective Drugs in Cell Populations Models], PloS one '''10''' (2), e0117558 (2015). | |||
'''2014''' | |||
* S. H. Mejías, B. Sot, R. Guantes and A. L. Cortajarena , ''[http://pubs.rsc.org/en/content/articlelanding/2014/nr/c4nr01210k#!divAbstract Controlled nanometric fibers of self-assembled designed protein scaffolds]'', Nanoscale '''6''', 10982-10988 (2014) | |||
* A. L. Sanz & D. G. Míguez, ''[http://www.landesbioscience.com/journals/neurogenesis/article/29529/ Dual R-Smads interplay in the regulation of vertebrate neurogenesis]''. Neurogenesis '''1''', e29529 (2014). | |||
'''2013''' | '''2013''' | ||
* | * T. Ruiz-Herrero, J. Estrada, R. Guantes, D. G. Miguez, ''[http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1003274 A tunable coarse-grained model for ligand-receptor interaction]'', PLOS Computational Biology '''9''', e1003274 (2013). | ||
* D. G. Míguez, ''Network Nonlinearities in Drug Treatment'', Interdisciplinary Sciences: Computational Life Sciences (in | * D. G. Míguez*, E. Gil-Guiñón, S. Pons and E. Martí ''[http://jcs.biologists.org/content/early/2013/10/08/jcs.130435.abstract Smad2 and Smad3 cooperate and antagonize simultaneously in vertebrate neurogenesis]'', Journal Of Cell Science '''126''', 5335 (2013). '''(*First and corresponding authorship)''' | ||
* V. Doldán-Martelli, R. Guantes | * M. Saade, I. Gutiérrez-Vallejo, G. Le Dréau, M. A. Rabadán, D. G. Miguez, J. Buceta, E. Martí ''[http://www.sciencedirect.com/science/article/pii/S2211124713003306 Sonic hedgehog signaling switches the mode of division in the developing nervous system]'', Cell Reports '''4''',492 (2013). | ||
* J. Estrada and R. Guantes, | * D. G. Míguez, ''[http://link.springer.com/article/10.1007%2Fs12539-013-0165-x Network Nonlinearities in Drug Treatment]'', Interdisciplinary Sciences: Computational Life Sciences 5,85 (2013). | ||
* P. Gregorio-Godoy, D. G. Míguez, ''[http://digital-library.theiet.org/content/journals/10.1049/iet-syb.2012.0026 Synthetic approaches to study transcriptional networks and noise in mammalian systems]'', IET Systems Biology 7,11 (2013). | |||
* V. Doldán-Martelli, R. Guantes, D. G. Míguez, ''[http://www.nature.com/psp/journal/v2/n2/full/psp20132a.html A Mathematical Model for the Rational Design of Chimeric Ligands in Selective Drug Therapies]'', CPT: Pharmacometrics & Systems Pharmacology '''2''', e26 (2013). | |||
* J. Estrada and R. Guantes, ''[http://pubs.rsc.org/en/content/articlelanding/2013/mb/c2mb25243k#!divAbstract Dynamic and structural constraints in signal propagation by regulatory networks]'' Mol. BioSyst. '''9''', 268-284 (2013). | |||
'''2012''' | '''2012''' | ||
* R. Guantes, B. Cayrol, F. Busi and V. Arluison, "Positive Regulatory Dynamics by a small noncoding RNA: Speeding Up Responses Under Temperature Stress", Molecular Biosystems '''8''' , 1707-1715 (2012). | * R. Guantes, B. Cayrol, F. Busi and V. Arluison, "Positive Regulatory Dynamics by a small noncoding RNA: Speeding Up Responses Under Temperature Stress", Molecular Biosystems '''8''' , 1707-1715 (2012). | ||
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* V. Doldán-Martelli, D. G. Míguez, ''Theoretical Approaches to Growth Hormone Signaling'', in 'Growth Hormones: Synthesis, Regulation and Health Implications', Eds. A. Andersdtr and J. Anderssen Nova Publishers ISBN 978-1-61942-681-8 (2012). | * V. Doldán-Martelli, D. G. Míguez, ''Theoretical Approaches to Growth Hormone Signaling'', in 'Growth Hormones: Synthesis, Regulation and Health Implications', Eds. A. Andersdtr and J. Anderssen Nova Publishers ISBN 978-1-61942-681-8 (2012). | ||
'''2011''' | '''2011''' | ||
* D. G. Míguez, Milos Dolnik, Irving Epstein and Alberto P. Muñuzuri, | * D. G. Míguez, Milos Dolnik, Irving Epstein and Alberto P. Muñuzuri, ''[http://pre.aps.org/abstract/PRE/v84/i4/e046210 Interaction Of Chemical Patterns in Coupled Layers]'', Phys. Rev. E, '''84''', 046210 (2011). | ||
'''2010''' | '''2010''' | ||
* D. G. Míguez, | * D. G. Míguez, ''[http://www.sciencedirect.com/science/article/pii/S0301462210000402 The role of asymmetric binding in ligand-receptor systems with 1:2 interaction ratio]'' Biophys Chem '''148''', 74-81 (2010) | ||
* D.G. Míguez, "Forcing of Nonlinear Pattern Formation Systems", Lambert Academic Publishing, ISBN 9783838364223 (2010) [http://www.amazon.com/Forcing-Nonlinear-Pattern-Formation-Systems/dp/3838364228 Book] | * D.G. Míguez, "Forcing of Nonlinear Pattern Formation Systems", Lambert Academic Publishing, ISBN 9783838364223 (2010) [http://www.amazon.com/Forcing-Nonlinear-Pattern-Formation-Systems/dp/3838364228 Book] | ||
* R. Guantes, J. Estrada and J. F. Poyatos, "Trade-offs and noise tolerance in signal detection by genetic circuits", PLoS ONE '''5''', e12314 (2010) | * R. Guantes, J. Estrada and J. F. Poyatos, "Trade-offs and noise tolerance in signal detection by genetic circuits", PLoS ONE '''5''', e12314 (2010) | ||
'''2009''' | '''2009''' | ||
* D. G. Míguez, P. McGraw, A. P. Muñuzuri and M. Menzinger, | * D. G. Míguez, P. McGraw, A. P. Muñuzuri and M. Menzinger, ''[http://pre.aps.org/abstract/PRE/v80/i2/e026208 Selection of Flow-Distributed Oscillation and Turing Patterns by Boundary Forcing in a Linearly Growing, Oscillating Medium]'', Phys. Rev. E, '''80''', 026208 (2009). | ||
'''2008''' | '''2008''' | ||
* I. A. Swinburne, D. G. Míguez, D. Landgraf, and P. A. Silver, | * I. A. Swinburne, D. G. Míguez, D. Landgraf, and P. A. Silver, ''[http://genesdev.cshlp.org/content/22/17/2342.full Intron length increases oscillatory periods of gene expression in animal cells]'', Genes & Dev., '''22''' 2008, 2342-2346 (2008). | ||
* S. Alonso, D. G. Míguez, F. Sagués, | * S. Alonso, D. G. Míguez, F. Sagués, ''[http://iopscience.iop.org/0295-5075/81/3/30006 Differential susceptibility to noise of mixed Turing and Hopf modes in a photosensitive chemical medium]'', Europhys. Lett, '''81''', 30006 (2008). | ||
* R. Guantes and J. F. Poyatos, "Multistable decision switches for flexible control of epigenetic differentiation", PLoS Computational Biology '''4''', e1000235 (2008) | * R. Guantes and J. F. Poyatos, "Multistable decision switches for flexible control of epigenetic differentiation", PLoS Computational Biology '''4''', e1000235 (2008) | ||
'''2007''' | '''2007''' | ||
* D. G. Míguez, V. K. Vanag, I. R. Epstein, | * D. G. Míguez, V. K. Vanag, I. R. Epstein, ''[http://www.pnas.org/content/104/17/6992.full Fronts and pulses in an enzymatic reaction with glucose oxidase]'' P.N.A.S. '''104''', 6992 (2007). | ||
* S. Arganda, R. Guantes and G. G. de Polavieja, "Sodium pumps adapt spike bursting to stimulus statistics", Nature Neuroscience '''10''', 1467-1473 (2007). | * S. Arganda, R. Guantes and G. G. de Polavieja, "Sodium pumps adapt spike bursting to stimulus statistics", Nature Neuroscience '''10''', 1467-1473 (2007). | ||
'''2006''' | '''2006''' | ||
* V. K. Vanag, D.G. Míguez, I. R. Epstein, | * V. K. Vanag, D.G. Míguez, I. R. Epstein, ''[http://jcp.aip.org/resource/1/jcpsa6/v125/i19/p194515_s1 Designing an Enzymatic Oscillator: Bistability and Feedback Control led Oscillations with Glucose Oxidase in a CSTR]'', J. Phys. Chem. '''125''', 194515 (2006). | ||
* D.G. Míguez, S. Alonso, A.P. Muñuzuri, F. Sagués, | * D.G. Míguez, S. Alonso, A.P. Muñuzuri, F. Sagués, ''[http://prl.aps.org/abstract/PRL/v97/i17/e178301 Experimental evidence of localized oscillations in the photosensitive chlorine dioxide-iodine-malonic acid reaction]'', Phys. Rev. Lett, '''97''', 178301 (2006). | ||
* D. G. Míguez, A. P. Muñuzuri, | * D. G. Míguez, A. P. Muñuzuri, ''[http://www.sciencedirect.com/science/article/pii/S0301462206002122 On the orientation of stripes in fish skin patterning]'', Biophys. Chem. '''124''', 161 (2006). | ||
* D. G. Míguez, R. A. Satnoianu, A. P. Muñuzuri, | * D. G. Míguez, R. A. Satnoianu, A. P. Muñuzuri, ''[http://pre.aps.org/abstract/PRE/v73/i2/e025201 Experimental steady pattern formation in reaction-diffusion-advection systems]'', Phys. Rev. E '''73''', 025201 (R) (2006). | ||
* D. G. Míguez, M. Dolnik, A. P. Muñuzuri, L. Kramer, | * D. G. Míguez, M. Dolnik, A. P. Muñuzuri, L. Kramer, ''[http://prl.aps.org/abstract/PRL/v96/i4/e048304 Effect of Axial Growth on Turing Pattern Formation]''. Phys. Rev. Lett '''96''', 048304 (2006). | ||
* D. G. Míguez, G. Izús, A. P. Muñuzuri, | * D. G. Míguez, G. Izús, A. P. Muñuzuri, ''[http://pre.aps.org/abstract/PRE/v73/i1/e016207 Robustness and Stability of Flow-and-Diffusion Structures]'', Phys. Rev. E '''73''', 016207 (2006). | ||
* R. Guantes and J. F. Poyatos, "Dynamical principles of two-component genetic oscillators", PLoS Computational Biology '''2''', e30 (2006). | * R. Guantes and J. F. Poyatos, "Dynamical principles of two-component genetic oscillators", PLoS Computational Biology '''2''', e30 (2006). | ||
'''2005''' | '''2005''' | ||
* D. G. Miguez, V. Perez-Villar, and A. P. Munuzuri, | * D. G. Miguez, V. Perez-Villar, and A. P. Munuzuri, ''[http://pre.aps.org/abstract/PRE/v71/i6/e066217 Turing instability controlled by spatiotemporal imposed dynamics]'', Phys. Rev. E '''71''', 066217 (2005). | ||
* R. Guantes and G. G. de Polavieja, "Variability in noise-driven integrator neurons", Physical Review E '''71''', 011911 (2005). | * R. Guantes and G. G. de Polavieja, "Variability in noise-driven integrator neurons", Physical Review E '''71''', 011911 (2005). | ||
* S. C. Farantos, S. Stamatiadis, L. Lathouwers and R. Guantes, "Grid enabled molecular dynamics: classical and quantum algorithms", Lecture Series on Computer and Computational Sciences '''1''', 1-16 (2005). | * S. C. Farantos, S. Stamatiadis, L. Lathouwers and R. Guantes, "Grid enabled molecular dynamics: classical and quantum algorithms", Lecture Series on Computer and Computational Sciences '''1''', 1-16 (2005). | ||
'''2004''' | '''2004''' | ||
* F. Sagués, D. G. Míguez, E. M. Nicola, A. P. Muñuzuri, J. Casademunt, L. Kramer, | * F. Sagués, D. G. Míguez, E. M. Nicola, A. P. Muñuzuri, J. Casademunt, L. Kramer, ''[http://www.sciencedirect.com/science/article/pii/S0167278904003197 Travelling-stripe forcing of Turing patterns]'', Physica D '''199''', 235 (2004). | ||
* D. G. Míguez, E. M. Nicola, A. P. Muñuzuri, J. Casademunt, F. Sagués, L. Kramer, | * D. G. Míguez, E. M. Nicola, A. P. Muñuzuri, J. Casademunt, F. Sagués, L. Kramer, ''[http://prl.aps.org/abstract/PRL/v93/i4/e048303 Traveling-Stripe Forcing Generates Hexagonal Patterns]'', Phys. Rev. Lett. '''93''', 048303 (2004). | ||
* M. Kærn, D. G. Míguez, A. P. Muñuzuri, M. Menzinger, | * M. Kærn, D. G. Míguez, A. P. Muñuzuri, M. Menzinger, ''[http://www.sciencedirect.com/science/article/pii/S030146220400078X Control of chemical pattern formation by a clock-and-wavefront type mechanism]'', Biophys. Chem. '''110''', 231 (2004). '''Shared 1st authorship'''. | ||
* S. Sengupta, R. Guantes, S. Miret-Artés and P. Hänggi, "Controlling directed transport in two-dimensional periodic structures under crossed electric fields", Physica A '''338''', 406 (2004). | * S. Sengupta, R. Guantes, S. Miret-Artés and P. Hänggi, "Controlling directed transport in two-dimensional periodic structures under crossed electric fields", Physica A '''338''', 406 (2004). | ||
* R. Guantes, A. S. Sanz, J. Margalef-Roig and S. Miret-Artés, "Atom-surface diffraction: a trajectory description", Surface Science Reports '''53''', 199-330 (2004). | * R. Guantes, A. S. Sanz, J. Margalef-Roig and S. Miret-Artés, "Atom-surface diffraction: a trajectory description", Surface Science Reports '''53''', 199-330 (2004). | ||
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* J. L. Vega, R. Guantes, S. Miret-Artés and D. A. Micha, "Collisional lineshapes for low frequency vibrations of an atom adsorbed on a metal surface", Journal of Chemical Physics '''121''', 8580 (2004) | * J. L. Vega, R. Guantes, S. Miret-Artés and D. A. Micha, "Collisional lineshapes for low frequency vibrations of an atom adsorbed on a metal surface", Journal of Chemical Physics '''121''', 8580 (2004) | ||
'''2003''' | '''2003''' | ||
* B. Peña, C. Pérez-García, A. Sanz-Anchelergues | * B. Peña, C. Pérez-García, A. Sanz-Anchelergues, D. G. Míguez, A. P. Muñuzuri, ''[http://pre.aps.org/abstract/PRE/v68/i5/e056206 Transverse instabilities in chemical Turing patterns of stripes]'', Phys. Rev. E '''68''', 056206 (2003). | ||
* S. Rüdiger, D. G. Míguez, A. P. Muñuzuri, F. Sagués, J. Casademunt, | * S. Rüdiger, D. G. Míguez, A. P. Muñuzuri, F. Sagués, J. Casademunt, ''[http://prl.aps.org/abstract/PRL/v90/i12/e128301 Dynamics of Turing Patterns under Spatiotemporal Forcing]'', Phys. Rev. Lett '''90''', 128301 (2003). | ||
* R. Guantes and S. Miret-Artés, "Chaotic transport of particles in two-dimensional periodic potentials driven by ac forces", Physical Review E '''67''', 046212 (2003). | * R. Guantes and S. Miret-Artés, "Chaotic transport of particles in two-dimensional periodic potentials driven by ac forces", Physical Review E '''67''', 046212 (2003). | ||
* R. Guantes, J. L. Vega, S. Miret-Artés and Eli Pollak, "Kramers' turnover theory for diffusion of Na atoms on a Cu(001) surface measured by He scattering", Journal of Chemical Physics '''119''', 2780 (2003). | * R. Guantes, J. L. Vega, S. Miret-Artés and Eli Pollak, "Kramers' turnover theory for diffusion of Na atoms on a Cu(001) surface measured by He scattering", Journal of Chemical Physics '''119''', 2780 (2003). |
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