Sysbio:Publications

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==Publications==
==Publications==
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'''2013'''
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* V. Doldán-Martelli, R. Guantes and D. Gómez-Míguez, "A mathematical model for the rational design of chimeric ligands in selective drug therapies", CPT: Pharmacometrics & Systems Pharmacology '''2''', e26 (2013).
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* J. Estrada and R. Guantes, "Dynamic and structural constraints in signal propagation by regulatory networks", Mol. BioSyst. '''9''', 268-284 (2013).
'''2012'''
'''2012'''
* R. Guantes, B. Cayrol, F. Busi and V. Arluison, "Positive Regulatory Dynamics by a small noncoding RNA: Speeding Up Responses Under Temperature Stress", Molecular Biosystems '''8''' , 1707-1715 (2012).  
* R. Guantes, B. Cayrol, F. Busi and V. Arluison, "Positive Regulatory Dynamics by a small noncoding RNA: Speeding Up Responses Under Temperature Stress", Molecular Biosystems '''8''' , 1707-1715 (2012).  

Revision as of 14:48, 16 February 2013

   

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Publications

2013

  • V. Doldán-Martelli, R. Guantes and D. Gómez-Míguez, "A mathematical model for the rational design of chimeric ligands in selective drug therapies", CPT: Pharmacometrics & Systems Pharmacology 2, e26 (2013).
  • J. Estrada and R. Guantes, "Dynamic and structural constraints in signal propagation by regulatory networks", Mol. BioSyst. 9, 268-284 (2013).

2012

  • R. Guantes, B. Cayrol, F. Busi and V. Arluison, "Positive Regulatory Dynamics by a small noncoding RNA: Speeding Up Responses Under Temperature Stress", Molecular Biosystems 8 , 1707-1715 (2012).
  • Florian Gnad , Javier Estrada and Jeremy Gunawardena , "Proteus: a web-based, context-specific modelling tool for molecular networks", Bioinformatics 28, 1284 - 1286 (2012).
  • V. Doldán-Martelli, D. G. Míguez, Theoretical Approaches to Growth Hormone Signaling, in 'Growth Hormones: Synthesis, Regulation and Health Implications', Eds. A. Andersdtr and J. Anderssen Nova Publishers ISBN 978-1-61942-681-8 (2012).

2011

  • D. G. Míguez, Network Nonlinearities in Drug Treatment (in press).
  • D. G. Míguez, Milos Dolnik, Irving Epstein and Alberto P. Muñuzuri, "Interaction Of Chemical Patterns in Coupled Layers", Phys. Rev. E, 84, 046210 (2011).

2010

  • D. G. Míguez, "The role of asymmetric binding in ligand-receptor systems with 1:2 interaction ratio", Biophys Chem 148, 74-81 (2010)
  • D.G. Míguez, "Forcing of Nonlinear Pattern Formation Systems", Lambert Academic Publishing, ISBN 9783838364223 (2010) Book
  • R. Guantes, J. Estrada and J. F. Poyatos, "Trade-offs and noise tolerance in signal detection by genetic circuits", PLoS ONE 5, e12314 (2010)

2009

  • D. G. Míguez, P. McGraw, A. P. Muñuzuri and M. Menzinger, "Selection of Flow-Distributed Oscillation and Turing Patterns by Boundary Forcing in a Linearly Growing, Oscillating Medium", Phys. Rev. E, 80, 026208 (2009).

2008

  • I. A. Swinburne, D. G. Míguez, D. Landgraf, and P. A. Silver, "Intron length increases oscillatory periods of gene expression in animal cells", Genes & Dev., 22 2008, 2342-2346 (2008).
  • S. Alonso, D. G. Míguez, F. Sagués, “Differential susceptibility to noise of mixed Turing and Hopf modes in a photosensitive chemical medium”, Europhys. Lett, 81, 30006 (2008).
  • R. Guantes and J. F. Poyatos, "Multistable decision switches for flexible control of epigenetic differentiation", PLoS Computational Biology 4, e1000235 (2008)

2007

  • D. G. Míguez, V. K. Vanag, I. R. Epstein, “Fronts and pulses in an enzymatic reaction with glucose oxidase" P.N.A.S. 104, 6992 (2007).
  • S. Arganda, R. Guantes and G. G. de Polavieja, "Sodium pumps adapt spike bursting to stimulus statistics", Nature Neuroscience 10, 1467-1473 (2007).

2006

  • V. K. Vanag, D.G. Míguez, I. R. Epstein, “Designing an Enzymatic Oscillator: Bistability and Feedback Control led Oscillations with Glucose Oxidase in a CSTR”, J. Phys. Chem. 125, 194515 (2006).
  • D.G. Míguez, S. Alonso, A.P. Muñuzuri, F. Sagués, “Turing patterns of oscillating spots”, Phys. Rev. Lett, 97, 178301 (2006).
  • D. G. Míguez, A. P. Muñuzuri,“On the orientation of stripes in fish skin patterning”, Biophys. Chem. 124, 161 (2006).
  • D. G. Míguez, R. A. Satnoianu, A. P. Muñuzuri, "Experimental steady pattern formation in reaction-diffusion-advection systems", Phys. Rev. E 73, 025201 (R) (2006).
  • D. G. Míguez, M. Dolnik, A. P. Muñuzuri, L. Kramer, "Effect of Axial Growth on Turing Pattern Formation". Phys. Rev. Lett 96, 048304 (2006).
  • D. G. Míguez, G. Izús, A. P. Muñuzuri, "Robustness and Stability of Flow-and-Diffusion Structures", Phys. Rev. E 73, 016207 (2006).
  • R. Guantes and J. F. Poyatos, "Dynamical principles of two-component genetic oscillators", PLoS Computational Biology 2, e30 (2006).

2005

  • D. G. Miguez, V. Perez-Villar, and A. P. Munuzuri, "Turing instability controlled by spatiotemporal imposed dynamics", Phys. Rev. E 71, 066217 (2005).
  • R. Guantes and G. G. de Polavieja, "Variability in noise-driven integrator neurons", Physical Review E 71, 011911 (2005).
  • S. C. Farantos, S. Stamatiadis, L. Lathouwers and R. Guantes, "Grid enabled molecular dynamics: classical and quantum algorithms", Lecture Series on Computer and Computational Sciences 1, 1-16 (2005).

2004

  • F. Sagués, D. G. Míguez, E. M. Nicola, A. P. Muñuzuri, J. Casademunt, L. Kramer, "Spatio-Temporal Forcing of Turing Patterns", Physica D 199, 235 (2004) .
  • D. G. Míguez, E. M. Nicola, A. P. Muñuzuri, J. Casademunt, F. Sagués, L. Kramer, "Traveling-Stripe Forcing Generates Hexagonal Patterns", Phys. Rev. Lett. 93, 048303 (2004) .
  • M. Kærn, D. G. Míguez, A. P. Muñuzuri, M. Menzinger, "Control of chemical pattern formation by a clock-and-wavefront type mechanism", Biophys. Chem. 110, 231 (2004). Shared 1st authorship.
  • S. Sengupta, R. Guantes, S. Miret-Artés and P. Hänggi, "Controlling directed transport in two-dimensional periodic structures under crossed electric fields", Physica A 338, 406 (2004).
  • R. Guantes, A. S. Sanz, J. Margalef-Roig and S. Miret-Artés, "Atom-surface diffraction: a trajectory description", Surface Science Reports 53, 199-330 (2004).
  • R. Guantes, J. L. Vega, S. Miret-Artés and Eli Pollak, "Hamiltonian theory for vibrational lineshapes of atoms adsorbed on surfaces", Journal of Chemical Physics 120, 10768 (2004).
  • J. L. Vega, R. Guantes and S. Miret-Artés, "Quasielastic and low vibrational lineshapes in atom-surface diffusion", Journal of Physics: Condensed Matter 16, S2879 (2004).
  • J. L. Vega, R. Guantes, S. Miret-Artés and D. A. Micha, "Collisional lineshapes for low frequency vibrations of an atom adsorbed on a metal surface", Journal of Chemical Physics 121, 8580 (2004)

2003

  • B. Peña, C. Pérez-García, A. Sanz-Anchelergues, "Transverse instabilities in chemical Turing patterns of stripes", D. G. Míguez, A. P. Muñuzuri, Phys. Rev. E 68, 056206 (2003) .
  • S. Rüdiger, D. G. Míguez, A. P. Muñuzuri, F. Sagués, J. Casademunt, "Dynamics of Turing Patterns under Spatiotemporal Forcing", Phys. Rev. Lett 90, 128301 (2003).
  • R. Guantes and S. Miret-Artés, "Chaotic transport of particles in two-dimensional periodic potentials driven by ac forces", Physical Review E 67, 046212 (2003).
  • R. Guantes, J. L. Vega, S. Miret-Artés and Eli Pollak, "Kramers' turnover theory for diffusion of Na atoms on a Cu(001) surface measured by He scattering", Journal of Chemical Physics 119, 2780 (2003).


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