Synthetic Biology:Tools: Difference between revisions
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===RNA Tools=== | ===RNA Tools=== | ||
*[http://www.bioinfo.rpi.edu/applications/mfold/ mFold ] by Michael Zuker. This is the main page with links to sites for predicting RNA and DNA folds, calculating Tm's and free energies. | *[http://www.bioinfo.rpi.edu/applications/mfold/ mFold] by Michael Zuker. This is the main page with links to sites for predicting RNA and DNA folds, calculating Tm's and free energies. | ||
===Protein Tools=== | ===Protein Tools=== | ||
Revision as of 18:29, 17 September 2005
Via this page, we hope to maintain a collection of links to online tools that are related to Synthetic Biology
DNA Tools
- Vector NTI by Informax, Inc.
- Free-to-academics Windows-only tool for sequence analysis and data management.
- Biopolymer calculator by Schepartz lab
- Calculate extinction coefficients, Tm's, and base composition for your DNA or RNA; calculate amino acid composition and extinction coefficient for your protein
RNA Tools
- mFold by Michael Zuker. This is the main page with links to sites for predicting RNA and DNA folds, calculating Tm's and free energies.
Protein Tools
- Zinc Finger Tools by Barbas Lab
- Design Zinc Finger DNA binding proteins
- ExPASy Proteomics server
- Collection of links to many pages to calculate parameters of your favorite proteins
General Tools
- Registry of Standard Biological Parts
- Colibri E. coli genome site; get sequences, see the position of your gene in the chromosome, see the function of your gene, and other fun stuff. You can also search for protein sequences/motifs within the E. coli genome.
